Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g252 ATGGCTACGAAAATGACACACACTGCTTTTCCAGCCGCAGCCTCTATGGTGTTCTTCTTCCTCGTCCTCCCGTCGACTGTGCTTGCGGATGATCCCCAAATCCCTGACGATGCAATTCAACTAGCTTCATGGTTCAACGATGTCATCCAGAGCCATAACCTCCGGCGGACGACTCTTGATCCGGTCCTAGTGAAGGCGGAGGAGAGGGTAAAAATCATCAAGGTAAGTAAAGGTGGTGGAGGAAACTTCAATAAGGTGATGGCGGCGGTCGATAGTGTTCCAGCTGGTAACACTCAACGCGTAATTATATGGATTGGAGGTGGAGTATATGAAGAGAAAATCAAGATTGATAGGAGTAAACCATTTATAACATTCTATGGATCGCCGGACGACATGCCGATGCTGTCATTTGATGGGACGGCTGCCAAGTTCGGGACAGTGGACAGTGCCACGCTAATAGTGGAATCAGATTACTTCATGGCGGTTAACATAATAGTCATTAACTCGTCCCCGAGGCCGGAAGGGAGAAGGAACGGAGGGCAGGCGGTGGCAGTGAGGGTGTCGGGTGATAAGGCCGCGTTTTATAACTGCAAGCTGGTCGGTTTTCAGGACACCCTATGTGATGATAGAGGCAGGCATTTTTTCCATGGATGCTACATTGAAGGCACTGTGGACTTCATATTTGGAAGTGGCAAGTCTCTCTATTTGAGCACTGAGCTACATGCCAAGGGAGCTGGTGGCGAATTTTCAGTGATCACAGCGCAGGCGAGGAAACTTGAATCAGAGGACAATGGATACTCTTTCGTCCACTGCAGGGTGTCGGGTAGTGGCAGCAACACTTACTTAGGGCGGGCATGGATGAGTAGACCGAGGGTGGTGTTTTCATACACCAACATGAGCACTGTTGTCCACCCTTTAGGCTGGTCCGATAACTTCCACCCTGAACGCGACTCATTGGTTTTCTATGGAGAATACAAGTGTATGGGGCCAGGAGCAAACACATCCAAACGAGCAAAATTCGCGAAGATGCTAGACGATGATGGGGTGAGACCCTTCGTCACCCTCAACTACATTGAAGCTTCAAAATGGTTGCTTCCTCCGCCACGCCTTGTACCCCGCGGAAAGAGATACGAATTGGTATATAGCAAATGGATGATGACGAGGTACTCCGTGCAGAACAATATTCTTGTTTAA 1194 49.16 MATKMTHTAFPAAASMVFFFLVLPSTVLADDPQIPDDAIQLASWFNDVIQSHNLRRTTLDPVLVKAEERVKIIKVSKGGGGNFNKVMAAVDSVPAGNTQRVIIWIGGGVYEEKIKIDRSKPFITFYGSPDDMPMLSFDGTAAKFGTVDSATLIVESDYFMAVNIIVINSSPRPEGRRNGGQAVAVRVSGDKAAFYNCKLVGFQDTLCDDRGRHFFHGCYIEGTVDFIFGSGKSLYLSTELHAKGAGGEFSVITAQARKLESEDNGYSFVHCRVSGSGSNTYLGRAWMSRPRVVFSYTNMSTVVHPLGWSDNFHPERDSLVFYGEYKCMGPGANTSKRAKFAKMLDDDGVRPFVTLNYIEASKWLLPPPRLVPRGKRYELVYSKWMMTRYSVQNNILV* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5068576 5070069 - Vvi16g252 Vvi16g252 777901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g252 397 Gene3D - 69 367 IPR012334 -
Vvi16g252 397 PANTHER PECTINESTERASE 63-RELATED 39 365 - -
Vvi16g252 397 SUPERFAMILY Pectin lyase-like 72 364 IPR011050 -
Vvi16g252 397 Pfam Pectinesterase 74 359 IPR000070 GO:0030599|GO:0042545
Vvi16g252 397 ProSitePatterns Pectinesterase signature 2. 220 229 IPR033131 -
Vvi16g252 397 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 39 365 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g252 K01051 - vvi:100242572 803.897