Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g253 ATGCCTACCAGAACAACGCAAATCGCTTTTCCGGCCACCGCCGTGGTTGCGCTCGTCCTTCTCCTCCTCCCGCTAATTATACTCGCCGATGACTTACAAATCCCGAACGATAAAACTCAACTAACTGCATGGTTCGGCAGAACCATCAAGAACTATAAGCTCCGGAGGGCGACGCTTGATCCAGAGCTGGTGAAGGCGGAGGACAACTTAAAAATCATTAAGGTGAGTAAAAGTGGCGGAGGAGACTTCAAGACGGTGACGGATGCCGTCAACAGTGTTCCGGAGGGTAACGCTGGGCGCGTAATTATATGGATTGGAGGCGGAGTATATGAAGAAAAAATCAAGATTGATAGGACTAAGCCCTTCGTCACATTCTACGGATCACCCGACCACATGCCCATGCTGTCATTCGACGGGACGGCGGCCAAGTACGGGACGGTGGACAGCGCCAGCCTGATAGTGGAATCTCATTACTTCATGATGGTGAACATAATTGTCATTAACTCGTCCCCGAAGCCGGACGGGAAACGGAAGGGGGCGCAGGCGGTGGCGCTGAGGATTTCAGGTGATAAGGCCGCGTTTTATAACAGCAAGCTGATCGGTTTTCAGGACACCCTATGTGATGATAGGAACAGACATTTTTTCAAGAAGTGCTACATTGAAGGCACTGTCGACTTCATATTTGGGAGCGGCAAGTCCATTTTTTTGAGCACAGAGGTACATGCCATGGGAGACGGGGCGATGCCTACGGTGATAACCGCGCACGCAAGGAACTTGGAATCAGAGGACACAGGATACTCATTCGTTCACTGCACGATATCTGGTACTGGGAGCACCACATTCTTAGGGCGGGCATGGATGGATAGACCCAAGGTGGTGTTTTCCCACACCTACATGAGCTCTGTTGTGAACCCTCTTGGCTGGTCCAATAACCTCCACCCTGATCGAGACTCAATGGTTTTCTTTGGAGAATACAACTGCTTGGGACCAGGAGCAAACATGTCGAGACGAGCTAAATTCACGAAGAAGTTGGATTTCAATGGAGCCAAGCCCTACATCAGCCTCAACTACATTAGGGCTTCATCATGGTTGCTTCCTCCGCCAAACCTATCGGCTCATCTCCTCATTTTCCGCGTAGACTTTCATGACCAGGAAAGTGGGTGCCAACAATGCCCCCAATTTCCCATTGTCTGTATGTGA 1200 50.42 MPTRTTQIAFPATAVVALVLLLLPLIILADDLQIPNDKTQLTAWFGRTIKNYKLRRATLDPELVKAEDNLKIIKVSKSGGGDFKTVTDAVNSVPEGNAGRVIIWIGGGVYEEKIKIDRTKPFVTFYGSPDHMPMLSFDGTAAKYGTVDSASLIVESHYFMMVNIIVINSSPKPDGKRKGAQAVALRISGDKAAFYNSKLIGFQDTLCDDRNRHFFKKCYIEGTVDFIFGSGKSIFLSTEVHAMGDGAMPTVITAHARNLESEDTGYSFVHCTISGTGSTTFLGRAWMDRPKVVFSHTYMSSVVNPLGWSNNLHPDRDSMVFFGEYNCLGPGANMSRRAKFTKKLDFNGAKPYISLNYIRASSWLLPPPNLSAHLLIFRVDFHDQESGCQQCPQFPIVCM* 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5102505 5106639 - Vvi16g253 Vvi16g253 777902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g253 399 PANTHER PECTINESTERASE 63-RELATED 38 365 - -
Vvi16g253 399 SUPERFAMILY Pectin lyase-like 72 364 IPR011050 -
Vvi16g253 399 Pfam Pectinesterase 73 358 IPR000070 GO:0030599|GO:0042545
Vvi16g253 399 Gene3D - 70 367 IPR012334 -
Vvi16g253 399 ProSitePatterns Pectinesterase signature 2. 220 229 IPR033131 -
Vvi16g253 399 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 38 365 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g253 K01051 - vvi:100264859 733.791