Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g271 ATGTGCCACAGTAGCTTGCAAATCGAGCTCGGCGAGTGGCTCAATTTCGTCACTGGTCAAAATGGAAGTGGTAAGAGCGCGATATTGACTGCGTTGTGCGTTGCGTTCGGGTCCCGAGCTAAAGAAACGCAAAGGGCGACCACGTTGAAGGAGTTCATCAAAACTGGTTGCAGTTATGCGGTTATTCAAGTGGAAATAAAAAATGAAGGGGAGGACGCCTTTAAGCCAGAGATATATGGTGATGTCATAATTGTGGAACGTCGGATTTCTGTATCTACCAGCTCCACTGTTTTGAAGGATCACCAAGGGAAAAGGGTTGCTAGTCGAAAAGAGGACCTTCATGAGCTTGTAGAACATTTTAATATTGATGTTGAAAATCCATGTGTGATAATGAGTCAAGACAAAAGCAGAGAATTTTTGCATTCAGGGAATGACAAAGATAAATTCAAGTTCTTTTTCAAGGCTACACTGCTTCAGCAGGTCAATGATCTACTGGTTAATATTGGGACTCGTTTAGATTCTGCAAATACACTGGTAGAGGAACTGGAAAAATCAATAGAACCAATTCTGAAGGAACTTAATGAGTTGCAAGTGAAAATTAGGAACATGGAGCATGTAGAAGAAATTTCTCAACAAGTACAGCAGTTGAAAAAGAAACTTGCCTGGTCATGGGTATATGATGTGGACCGACAACTCCAGGAACAAAGTGCAAAAATTGAAAAGCTTAAAGATCGGATACCGACTTGCCAAGCTAGGATTGATCGACAACTTGGTAAAATGGAGGAGTTGAGGGAGTGCTTGACCAAGAAGAAAACTCAAATTGCATGTATGATGGAAAAGACAACAGAAGTGAGGAGAATGAAGGAGGACTTGCAGCAGAGGCTTTCCTTGGCCACAAAAGAGAGGCTTGAGCTAGAAGAAGAACATTGCCGGAAAACTAACAAAATTCAGAAGATGGTGAATCTTGTTAGGCGGCTTGATCAACAAGTTCATGAGGTTCATGAGCAAGATCTAAAAAATACTCAGGCTGAAGAATCTGAAATAAAGGAAATGCTGAAGGGACTCCAAGATGAGCTTGATACAACAAATTTGATACTATCAAGGTTGAAGGAAGAAGAAAGTGCCTTATCAGCAAGCCTATCCATCAAAATGGATGAAATCAGAAAGATTTCGGATGAGATTGACGATTATGAAAGAAAGCATCGTGAAAACTATTCTTACATCTGCGAACTTCAGCAACACCAAACCAACAAGGTTACAGCTTTTGGAGGGGATAGGGTGATCCAACTTTTACGTGCAATTGAGAGACATCATCAAAGATTCAAAAGGCCACCCATTGGTCCAATTGGCGCCCATTTGACTTTAGTCAATGGTGACATATGGGCTATTGCTGTTGAAATTGCCATTGGAAAGATGCTTAATGCTTTCATTGTGACGGATCATAAAGATTCCCTTCTTTTGAGAGGATGTGCTAGAGAAGCAAACTATAACCACCTTCAGATAATCATATACGACTTTTCAAGGCCAAGATTGAATATTCCATATCACATGCTTCCTCAGACACAGCACCCAACTCTTATTTCTGCTTTGCATTCAGACAATCCTACTGTAATGAATGTCTTGGTTGATATGGGCAATGCTGAGAGACAAGTGCTTGTTAGAGACTATGAAGTTGGAAAAACAGTTGCTTTTGACCAAAGAATTCCGAACTTGAAGGAAGTTTACACATCAGATGGATATAGAATGTTTTCTCGTGGTTCAGTCCAGACCATTCTTCCTCCAAATAAGAAGGCTAGAACTGGCCGCCTTTGTAGTTCTTTCGACAGTCAGATCAAGGATCTTGAAAGATATGCATTAGACATTCAAGAACATGGTCAGGAAGTAAAAAGAAAGAAAAGGAATGCAGAGGAAGAACTTCAGGATCTTCAAGATAAACTACAGAGTATAAAGAGGAGGCGTCTTAATGCTGAGCGGGATGTGATGTCAAAGAAACTAAGATTGCAAGATGTGAAGAATTCATATGTTGCTGAATCCAATCCAGCACCTGCATCTTCTGTTGATGAGCTTCATCATGAAATCTCAAAAGTACAAGCTGAGATACGAGAAAAGGAAATCCTGTTAGAAGATTTCCAATTGAGAATGAGCAAAGCAGATGCAAAGGCTAATGATCTGAAATTATCCTTTGAGAATTTATGTGAATCAGCGAAAGTAGAAATTGATGCCTATGAGGCAGCAGAGAATGAACTAGTAGTGATTGAACAAGAATTGTGTTCTGCTGAAACGGAGAAAACCCATTATGAAGGGATAATGAATAACAAGGTGCTTCCTGACATAAAAGAGGCAGAGACACAGTATCAGGAGCTTGAACACAATCGTAAGGAGAGTTGCAGGAAGGCTTCTATTATTTGTCCTGAAAGTGAGATTGAAGCTTTGGGAGGCTGCAAGAGCACCCCAGAGCAACTGAGTGCCCAATTAAATAGGCTGAATCAGAGACTTCAAAGTGAAAGCCAGAGATATGCTGAACCTATTGAGGATCTCAGAATGATTTATGACAAAAAAGAGCGCAGAATTTTGAGAAAACAGCAAACTTATGAAGCTTTTAGAGAGAAATTGAATGCATGCAAGGAAGCCTTAGACCTGCGATGGAGCAAGTTTCAGAGGAATGCCACTCTTCTAAAGCGCCAGTTGACTTGGCAATTTAATGCTCACTTGAGAAAGAAAGGGATCAGTGGGCACATTAAAGTTAGTTATGAAGAGAAAACCCTATCAGTGGAGGTAAAGATGCCTCAAGATGCATCAAACAACATTGTTCGTGATACTCGAGGGCTTTCAGGTGGGGAACGCTCTTTCTCGACATTATGCTTTGCATTGGCTCTTCATGAGATGACAGAATCCCCATTCAGAGCAATGGATGAGTTTGATGTGTTTATGGATGCAGTTAGCCGGAAGATCAGCTTGGACACCCTTGTGAATTTTGCATTGGCACAAGGATCTCAATGGATTTTTATCACTCCTCATGATATCAGTATGGTTAAACAAGGGGAGAGGATAAAGAAGCAGCAAATGGCAGCCCCTCGTTCTTGA 3084 40.79 MCHSSLQIELGEWLNFVTGQNGSGKSAILTALCVAFGSRAKETQRATTLKEFIKTGCSYAVIQVEIKNEGEDAFKPEIYGDVIIVERRISVSTSSTVLKDHQGKRVASRKEDLHELVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVNDLLVNIGTRLDSANTLVEELEKSIEPILKELNELQVKIRNMEHVEEISQQVQQLKKKLAWSWVYDVDRQLQEQSAKIEKLKDRIPTCQARIDRQLGKMEELRECLTKKKTQIACMMEKTTEVRRMKEDLQQRLSLATKERLELEEEHCRKTNKIQKMVNLVRRLDQQVHEVHEQDLKNTQAEESEIKEMLKGLQDELDTTNLILSRLKEEESALSASLSIKMDEIRKISDEIDDYERKHRENYSYICELQQHQTNKVTAFGGDRVIQLLRAIERHHQRFKRPPIGPIGAHLTLVNGDIWAIAVEIAIGKMLNAFIVTDHKDSLLLRGCAREANYNHLQIIIYDFSRPRLNIPYHMLPQTQHPTLISALHSDNPTVMNVLVDMGNAERQVLVRDYEVGKTVAFDQRIPNLKEVYTSDGYRMFSRGSVQTILPPNKKARTGRLCSSFDSQIKDLERYALDIQEHGQEVKRKKRNAEEELQDLQDKLQSIKRRRLNAERDVMSKKLRLQDVKNSYVAESNPAPASSVDELHHEISKVQAEIREKEILLEDFQLRMSKADAKANDLKLSFENLCESAKVEIDAYEAAENELVVIEQELCSAETEKTHYEGIMNNKVLPDIKEAETQYQELEHNRKESCRKASIICPESEIEALGGCKSTPEQLSAQLNRLNQRLQSESQRYAEPIEDLRMIYDKKERRILRKQQTYEAFREKLNACKEALDLRWSKFQRNATLLKRQLTWQFNAHLRKKGISGHIKVSYEEKTLSVEVKMPQDASNNIVRDTRGLSGGERSFSTLCFALALHEMTESPFRAMDEFDVFMDAVSRKISLDTLVNFALAQGSQWIFITPHDISMVKQGERIKKQQMAAPRS* 1028
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5567307 5665234 - Vvi16g271 Vvi16g271 777920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g271 1027 Gene3D - 716 1022 IPR027417 -
Vvi16g271 1027 CDD ABC_SMC6_euk 931 1027 - -
Vvi16g271 1027 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 1 1027 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Vvi16g271 1027 Coils Coil 850 870 - -
Vvi16g271 1027 Coils Coil 225 252 - -
Vvi16g271 1027 SUPERFAMILY Smc hinge domain 385 586 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vvi16g271 1027 Coils Coil 179 199 - -
Vvi16g271 1027 Pfam RecF/RecN/SMC N terminal domain 7 1019 IPR003395 -
Vvi16g271 1027 Coils Coil 686 713 - -
Vvi16g271 1027 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 1 1027 - -
Vvi16g271 1027 Coils Coil 735 755 - -
Vvi16g271 1027 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 1017 IPR027417 -
Vvi16g271 1027 Coils Coil 614 659 - -
Vvi16g271 1027 Gene3D - 1 190 IPR027417 -
Vvi16g271 1027 CDD ABC_SMC6_euk 1 144 - -
Vvi16g271 1027 Coils Coil 380 400 - -
Vvi16g271 1027 Coils Coil 338 372 - -
Vvi16g271 1027 Coils Coil 778 798 - -
Vvi16g271 1027 Coils Coil 288 308 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g271 K22804 - vvi:100249449 2003.79