Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g271 ATGTGCCACAGTAGCTTGCAAATCGAGCTCGGCGAGTGGCTCAATTTCGTCACTGGTCAAAATGGAAGTGGTAAGAGCGCGATATTGACTGCGTTGTGCGTTGCGTTCGGGTCCCGAGCTAAAGAAACGCAAAGGGCGACCACGTTGAAGGAGTTCATCAAAACTGGTTGCAGTTATGCGGTTATTCAAGTGGAAATAAAAAATGAAGGGGAGGACGCCTTTAAGCCAGAGATATATGGTGATGTCATAATTGTGGAACGTCGGATTTCTGTATCTACCAGCTCCACTGTTTTGAAGGATCACCAAGGGAAAAGGGTTGCTAGTCGAAAAGAGGACCTTCATGAGCTTGTAGAACATTTTAATATTGATGTTGAAAATCCATGTGTGATAATGAGTCAAGACAAAAGCAGAGAATTTTTGCATTCAGGGAATGACAAAGATAAATTCAAGTTCTTTTTCAAGGCTACACTGCTTCAGCAGGTCAATGATCTACTGGTTAATATTGGGACTCGTTTAGATTCTGCAAATACACTGGTAGAGGAACTGGAAAAATCAATAGAACCAATTCTGAAGGAACTTAATGAGTTGCAAGTGAAAATTAGGAACATGGAGCATGTAGAAGAAATTTCTCAACAAGTACAGCAGTTGAAAAAGAAACTTGCCTGGTCATGGGTATATGATGTGGACCGACAACTCCAGGAACAAAGTGCAAAAATTGAAAAGCTTAAAGATCGGATACCGACTTGCCAAGCTAGGATTGATCGACAACTTGGTAAAATGGAGGAGTTGAGGGAGTGCTTGACCAAGAAGAAAACTCAAATTGCATGTATGATGGAAAAGACAACAGAAGTGAGGAGAATGAAGGAGGACTTGCAGCAGAGGCTTTCCTTGGCCACAAAAGAGAGGCTTGAGCTAGAAGAAGAACATTGCCGGAAAACTAACAAAATTCAGAAGATGGTGAATCTTGTTAGGCGGCTTGATCAACAAGTTCATGAGGTTCATGAGCAAGATCTAAAAAATACTCAGGCTGAAGAATCTGAAATAAAGGAAATGCTGAAGGGACTCCAAGATGAGCTTGATACAACAAATTTGATACTATCAAGGTTGAAGGAAGAAGAAAGTGCCTTATCAGCAAGCCTATCCATCAAAATGGATGAAATCAGAAAGATTTCGGATGAGATTGACGATTATGAAAGAAAGCATCGTGAAAACTATTCTTACATCTGCGAACTTCAGCAACACCAAACCAACAAGGTTACAGCTTTTGGAGGGGATAGGGTGATCCAACTTTTACGTGCAATTGAGAGACATCATCAAAGATTCAAAAGGCCACCCATTGGTCCAATTGGCGCCCATTTGACTTTAGTCAATGGTGACATATGGGCTATTGCTGTTGAAATTGCCATTGGAAAGATGCTTAATGCTTTCATTGTGACGGATCATAAAGATTCCCTTCTTTTGAGAGGATGTGCTAGAGAAGCAAACTATAACCACCTTCAGATAATCATATACGACTTTTCAAGGCCAAGATTGAATATTCCATATCACATGCTTCCTCAGACACAGCACCCAACTCTTATTTCTGCTTTGCATTCAGACAATCCTACTGTAATGAATGTCTTGGTTGATATGGGCAATGCTGAGAGACAAGTGCTTGTTAGAGACTATGAAGTTGGAAAAACAGTTGCTTTTGACCAAAGAATTCCGAACTTGAAGGAAGTTTACACATCAGATGGATATAGAATGTTTTCTCGTGGTTCAGTCCAGACCATTCTTCCTCCAAATAAGAAGGCTAGAACTGGCCGCCTTTGTAGTTCTTTCGACAGTCAGATCAAGGATCTTGAAAGATATGCATTAGACATTCAAGAACATGGTCAGGAAGTAAAAAGAAAGAAAAGGAATGCAGAGGAAGAACTTCAGGATCTTCAAGATAAACTACAGAGTATAAAGAGGAGGCGTCTTAATGCTGAGCGGGATGTGATGTCAAAGAAACTAAGATTGCAAGATGTGAAGAATTCATATGTTGCTGAATCCAATCCAGCACCTGCATCTTCTGTTGATGAGCTTCATCATGAAATCTCAAAAGTACAAGCTGAGATACGAGAAAAGGAAATCCTGTTAGAAGATTTCCAATTGAGAATGAGCAAAGCAGATGCAAAGGCTAATGATCTGAAATTATCCTTTGAGAATTTATGTGAATCAGCGAAAGTAGAAATTGATGCCTATGAGGCAGCAGAGAATGAACTAGTAGTGATTGAACAAGAATTGTGTTCTGCTGAAACGGAGAAAACCCATTATGAAGGGATAATGAATAACAAGGTGCTTCCTGACATAAAAGAGGCAGAGACACAGTATCAGGAGCTTGAACACAATCGTAAGGAGAGTTGCAGGAAGGCTTCTATTATTTGTCCTGAAAGTGAGATTGAAGCTTTGGGAGGCTGCAAGAGCACCCCAGAGCAACTGAGTGCCCAATTAAATAGGCTGAATCAGAGACTTCAAAGTGAAAGCCAGAGATATGCTGAACCTATTGAGGATCTCAGAATGATTTATGACAAAAAAGAGCGCAGAATTTTGAGAAAACAGCAAACTTATGAAGCTTTTAGAGAGAAATTGAATGCATGCAAGGAAGCCTTAGACCTGCGATGGAGCAAGTTTCAGAGGAATGCCACTCTTCTAAAGCGCCAGTTGACTTGGCAATTTAATGCTCACTTGAGAAAGAAAGGGATCAGTGGGCACATTAAAGTTAGTTATGAAGAGAAAACCCTATCAGTGGAGGTAAAGATGCCTCAAGATGCATCAAACAACATTGTTCGTGATACTCGAGGGCTTTCAGGTGGGGAACGCTCTTTCTCGACATTATGCTTTGCATTGGCTCTTCATGAGATGACAGAATCCCCATTCAGAGCAATGGATGAGTTTGATGTGTTTATGGATGCAGTTAGCCGGAAGATCAGCTTGGACACCCTTGTGAATTTTGCATTGGCACAAGGATCTCAATGGATTTTTATCACTCCTCATGATATCAGTATGGTTAAACAAGGGGAGAGGATAAAGAAGCAGCAAATGGCAGCCCCTCGTTCTTGA 3084 40.79 MCHSSLQIELGEWLNFVTGQNGSGKSAILTALCVAFGSRAKETQRATTLKEFIKTGCSYAVIQVEIKNEGEDAFKPEIYGDVIIVERRISVSTSSTVLKDHQGKRVASRKEDLHELVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVNDLLVNIGTRLDSANTLVEELEKSIEPILKELNELQVKIRNMEHVEEISQQVQQLKKKLAWSWVYDVDRQLQEQSAKIEKLKDRIPTCQARIDRQLGKMEELRECLTKKKTQIACMMEKTTEVRRMKEDLQQRLSLATKERLELEEEHCRKTNKIQKMVNLVRRLDQQVHEVHEQDLKNTQAEESEIKEMLKGLQDELDTTNLILSRLKEEESALSASLSIKMDEIRKISDEIDDYERKHRENYSYICELQQHQTNKVTAFGGDRVIQLLRAIERHHQRFKRPPIGPIGAHLTLVNGDIWAIAVEIAIGKMLNAFIVTDHKDSLLLRGCAREANYNHLQIIIYDFSRPRLNIPYHMLPQTQHPTLISALHSDNPTVMNVLVDMGNAERQVLVRDYEVGKTVAFDQRIPNLKEVYTSDGYRMFSRGSVQTILPPNKKARTGRLCSSFDSQIKDLERYALDIQEHGQEVKRKKRNAEEELQDLQDKLQSIKRRRLNAERDVMSKKLRLQDVKNSYVAESNPAPASSVDELHHEISKVQAEIREKEILLEDFQLRMSKADAKANDLKLSFENLCESAKVEIDAYEAAENELVVIEQELCSAETEKTHYEGIMNNKVLPDIKEAETQYQELEHNRKESCRKASIICPESEIEALGGCKSTPEQLSAQLNRLNQRLQSESQRYAEPIEDLRMIYDKKERRILRKQQTYEAFREKLNACKEALDLRWSKFQRNATLLKRQLTWQFNAHLRKKGISGHIKVSYEEKTLSVEVKMPQDASNNIVRDTRGLSGGERSFSTLCFALALHEMTESPFRAMDEFDVFMDAVSRKISLDTLVNFALAQGSQWIFITPHDISMVKQGERIKKQQMAAPRS* 1028
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5567307 5665234 - Vvi16g271 Vvi16g271 777920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g271 1027 Gene3D - 716 1022 IPR027417 -
Vvi16g271 1027 CDD ABC_SMC6_euk 931 1027 - -
Vvi16g271 1027 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 1 1027 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Vvi16g271 1027 Coils Coil 850 870 - -
Vvi16g271 1027 Coils Coil 225 252 - -
Vvi16g271 1027 SUPERFAMILY Smc hinge domain 385 586 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vvi16g271 1027 Coils Coil 179 199 - -
Vvi16g271 1027 Pfam RecF/RecN/SMC N terminal domain 7 1019 IPR003395 -
Vvi16g271 1027 Coils Coil 686 713 - -
Vvi16g271 1027 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 1 1027 - -
Vvi16g271 1027 Coils Coil 735 755 - -
Vvi16g271 1027 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 1017 IPR027417 -
Vvi16g271 1027 Coils Coil 614 659 - -
Vvi16g271 1027 Gene3D - 1 190 IPR027417 -
Vvi16g271 1027 CDD ABC_SMC6_euk 1 144 - -
Vvi16g271 1027 Coils Coil 380 400 - -
Vvi16g271 1027 Coils Coil 338 372 - -
Vvi16g271 1027 Coils Coil 778 798 - -
Vvi16g271 1027 Coils Coil 288 308 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g271 K22804 SMC6; structural maintenance of chromosomes protein 6 - vvi:100249449 2003.79
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g271 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi13g1074 . 1 1042 Structural Maintenance of Chromosomes family AT5G15920 69.5 0.0e+00 1380.2
Vvi16g271 . 1 1028 Structural Maintenance of Chromosomes family AT5G07660 62.5 0.0e+00 1211.1
Vvi16g371 . 28 160 Structural Maintenance of Chromosomes family AT5G07660 59.7 9.9e-37 152.9
Vvi16g271 . 1 1028 Structural Maintenance of Chromosomes family AT5G61460 64.7 0.0e+00 1243.4
Vvi16g371 . 28 160 Structural Maintenance of Chromosomes family AT5G61460 63.4 1.4e-38 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010088 0 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 32