Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g291 ATGGTTAGTTTTAACTCGAGGAGAGTTGTGTTCCTGAAACTCCCCTTTATAAATACGCACACCCTCTGCACTCCCGGTGCAAATTCTTTCCATTATCATTGTCCAAAGATTTTCCAAACCTCTGCACTGATGAATATCTCGAAAATGTGGAAACACCTGAACCTGAGCGCCAGTTTCTACGATTTCTCGGATTACCAGCTTGAGGAGTTGGGCCTCAACCCAACCCCATTCCAGTACCTCCCCGATCGCACCCAGCATCCGATTTACAGCTCGGACGAATTCCGAATGTACGGGTTTAAAATAAAAAAGTGCTCAAAGACCCGCAGCCATGACTGGACGGAGTGCCCATTCGCGCATCGAGGCGAAAAGGCGAAGCGTCGGGATCCGCGCAAAGTGAACTATGCGGCCATTTCATGCCCCGACTTCCGAAACGGCGCCGAGTGCCCTAGGGGTGAGGCCTGCGAGTTCGCGCACGGCGTTTTCGAGTACTGGCTGCATCCGGCCAAGTACCGCACACGTGCATGCAATGCCGGGACATTTTGTCAACGTAAGGTGTGCTTCTTCGCACACACGCCGGAGCAGCTCCGTGCGGAGACCAAGTACAAGTGCCATTTCACGTACCGGGTGCGGAGGTCCAACGGCGGAGAGGACAAGCGAAGTGGATCGGACGCTGACGAAAGATCGGTTTTTGTTGACTCAGAGGCAGCAGCCAAGAGTGAGAGCCCTGTGGATGGGTACGCTGAATTTTTGAGGGCTCTGAGGGCGCTAAAGATCCCGCACGACGATGACAAGAGTTTCGGATACGACACTGTTTCGGACCCGGATTGGAAGTTCGATTGGATTTCGGACTTGGTGGAGTAA 861 53.31 MVSFNSRRVVFLKLPFINTHTLCTPGANSFHYHCPKIFQTSALMNISKMWKHLNLSASFYDFSDYQLEELGLNPTPFQYLPDRTQHPIYSSDEFRMYGFKIKKCSKTRSHDWTECPFAHRGEKAKRRDPRKVNYAAISCPDFRNGAECPRGEACEFAHGVFEYWLHPAKYRTRACNAGTFCQRKVCFFAHTPEQLRAETKYKCHFTYRVRRSNGGEDKRSGSDADERSVFVDSEAAAKSESPVDGYAEFLRALRALKIPHDDDKSFGYDTVSDPDWKFDWISDLVE* 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6538758 6540125 + Vvi16g291 Vvi16g291 777940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g291 286 ProSiteProfiles Zinc finger C3H1-type profile. 133 161 IPR000571 GO:0046872
Vvi16g291 286 PANTHER UNKEMPT FAMILY MEMBER 78 285 IPR045234 -
Vvi16g291 286 SUPERFAMILY CCCH zinc finger 133 164 IPR036855 GO:0046872
Vvi16g291 286 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 54 78 285 - -
Vvi16g291 286 SMART c3hfinal6 133 160 IPR000571 GO:0046872
Vvi16g291 286 SMART c3hfinal6 169 192 IPR000571 GO:0046872
Vvi16g291 286 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 159 IPR000571 GO:0046872
Vvi16g291 286 Gene3D - 136 198 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14121 PF00642 zf-CCCH 5.00E-06 CL0537 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g291 - - vvi:100254431 523.857