Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g303 ATGGCAGAAGAAGTTTCATCGGTTCACTTCATTCACCAACAACTTCTCTTCGACTTTGAAGCTTTCGAAAGCTTCGTCTCTCATGTAAATGATCCATCCCAAACTTCAACCTCTGATTCGAATGCTTCCACCTCAGATATTAATCCGCTCTCTAATTACTTCAACCCCCATGAAGATGAAAACAACCCCTCTCTCCTCCACTGTTCTACCTCTGCTCCGTCTGGCTTTTTCCAGTTTCAAACCAAATCCCCCAAAACTTCCACATTAAGTCATCGGCGACCTCCACTCAGCATCTCAGTCCCTCAGCCCACCTTTTCTCAGTCACCGGCGGAGTCCGATTCAGGCGATATCAGGCATTACAGAGGCGTGAGGAGACGACCATGGGGGAAATTTGCGGCGGAGATTCGAGACCCGAATCGGAGAGGATCGAGGGTATGGCTGGGGACATTCGAGACTGCCATTGAAGCCGCCAGAGCTTATGATCGAGCTGCTTTTGAGATGCGTGGCTCCAAAGCTATTCTCAATTTCCCCCTTGAAGCTGATAATTGGTCGGGATCTGATCCACCAGCGATATCTGGCCGGAAAAGGGAGAGAGACAGTGAGACTGAAGAGAGACAACAAGTGGAGATTAAGGTTTTAAAGCAAGAGGAGTACTTGCCCGAATCCGACAGCACGCTGGCGGCGGCCAGTCATGGGGTTAGTCCGTTAACTCCGTCAAACTTTAGGGCCAGCTGGGAGGAGAGAGAGATGGAGGGAATATTCCATCTGCCACCGTTAACGCCGTTATCACCCCATCCTTGGATAGCATATTCTCAGCTTATAGTTTGA 828 49.64 MAEEVSSVHFIHQQLLFDFEAFESFVSHVNDPSQTSTSDSNASTSDINPLSNYFNPHEDENNPSLLHCSTSAPSGFFQFQTKSPKTSTLSHRRPPLSISVPQPTFSQSPAESDSGDIRHYRGVRRRPWGKFAAEIRDPNRRGSRVWLGTFETAIEAARAYDRAAFEMRGSKAILNFPLEADNWSGSDPPAISGRKRERDSETEERQQVEIKVLKQEEYLPESDSTLAAASHGVSPLTPSNFRASWEEREMEGIFHLPPLTPLSPHPWIAYSQLIV* 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6705920 6706748 + Vvi16g303 Vvi16g303 777952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g303 275 MobiDBLite consensus disorder prediction 30 67 - -
Vvi16g303 275 Pfam AP2 domain 119 169 IPR001471 GO:0003700|GO:0006355
Vvi16g303 275 MobiDBLite consensus disorder prediction 80 113 - -
Vvi16g303 275 Gene3D AP2/ERF domain 118 179 IPR036955 GO:0003700|GO:0006355
Vvi16g303 275 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 253 - -
Vvi16g303 275 MobiDBLite consensus disorder prediction 80 116 - -
Vvi16g303 275 MobiDBLite consensus disorder prediction 191 205 - -
Vvi16g303 275 ProSiteProfiles AP2/ERF domain profile. 119 177 IPR001471 GO:0003700|GO:0006355
Vvi16g303 275 SMART rav1_2 119 183 IPR001471 GO:0003700|GO:0006355
Vvi16g303 275 CDD AP2 119 177 IPR001471 GO:0003700|GO:0006355
Vvi16g303 275 MobiDBLite consensus disorder prediction 184 205 - -
Vvi16g303 275 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 3 253 - -
Vvi16g303 275 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Vvi16g303 275 PRINTS Ethylene responsive element binding protein signature 143 159 IPR001471 GO:0003700|GO:0006355
Vvi16g303 275 SUPERFAMILY DNA-binding domain 119 178 IPR016177 GO:0003677
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14125 PF00847 AP2 1.20E-15 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g303 K09286 - vvi:100259725 534.258