Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g305 ATGGAAAAAGAAGCTTCAGCACTGCACTTCATCCACCAGCATCTCCTCAGCGACTTTGAATCTCTGGAAACCTTCGTCGTTAATTTTGAGACCAAATCCCCAAAACTTTCCAAATTAAGTCATCGGCGACCTTCACTGTGCATCTCAGTTCCTCCGCCGCCGATTCCTCAGCTCCCGGCGGAGTCCGATCCCGGCGATGCCAGGCATTACAGAGGCGTGCGACGACGACCGTGGGGGAAATTCGCGGCGGAGATTAGAGACCCAAATCGGAGAGGATCGAGGGTATGGCTGGGGACATTCGAGACAGCCATTGAAGCAGCTAGAGCTTATGATCGAGCTGCTTTCAAGATGCGTGGCTCCAAAGCTATCCTTAATTTCCCTCTTGAAGCTGGGAATTTGTCGTGTTCTGACCCGACGGTGATATCCGGCCGGAAAAGGCAGAGAGAGTGCGAGAGTGGAGAGAGAGAGCAAGCAGAGACTAAGGTTTTAAAGCAAGAGGAGCAGCTGCCGGATTCTGACTGCAATCTTGCGGCGGCCAGTGTTTTTGGGATCAGTCCGTTAATGCCGTCAAGTTGGAGGACCATTTGGGAGGGGAAAGCCACGGACGGAATATTCAATTTGCCACCGTTGACGCCGTTATCACCCCATCCTTGGATTGGATATTCCCAGCTTATAGTCTGA 681 52.13 MEKEASALHFIHQHLLSDFESLETFVVNFETKSPKLSKLSHRRPSLCISVPPPPIPQLPAESDPGDARHYRGVRRRPWGKFAAEIRDPNRRGSRVWLGTFETAIEAARAYDRAAFKMRGSKAILNFPLEAGNLSCSDPTVISGRKRQRECESGEREQAETKVLKQEEQLPDSDCNLAAASVFGISPLMPSSWRTIWEGKATDGIFNLPPLTPLSPHPWIGYSQLIV* 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6743259 6744066 - Vvi16g305 Vvi16g305 777954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g305 226 MobiDBLite consensus disorder prediction 50 71 - -
Vvi16g305 226 Gene3D AP2/ERF domain 68 129 IPR036955 GO:0003700|GO:0006355
Vvi16g305 226 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 203 - -
Vvi16g305 226 MobiDBLite consensus disorder prediction 147 166 - -
Vvi16g305 226 ProSiteProfiles AP2/ERF domain profile. 69 127 IPR001471 GO:0003700|GO:0006355
Vvi16g305 226 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Vvi16g305 226 PRINTS Ethylene responsive element binding protein signature 109 129 IPR001471 GO:0003700|GO:0006355
Vvi16g305 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 3 203 - -
Vvi16g305 226 Pfam AP2 domain 69 119 IPR001471 GO:0003700|GO:0006355
Vvi16g305 226 SUPERFAMILY DNA-binding domain 69 128 IPR016177 GO:0003677
Vvi16g305 226 CDD AP2 69 127 IPR001471 GO:0003700|GO:0006355
Vvi16g305 226 SMART rav1_2 69 133 IPR001471 GO:0003700|GO:0006355
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14127 PF00847 AP2 9.00E-16 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g305 K09286 - vvi:100244353 418.313