Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g309 ATGGCAGAAGAAGCTTCCTCGCTTCACCTCATTCACCAACAGCTCCTCTTCGACTTTGAATCTTTCGAAGGCTTCGTCTCTCATGTAAATGTTCCATCCCAAACTTCAACCTCTGATTCAAGTCCTTCCACCTCAGATATTGTTCCGCTCTCTAATTTCTCCGATCTCCATGAAGATGAAAACAACCCTTTTCTCCTCCACTGTTCTACCTCGGCTCCATCAGGGTTTTTCCAGTTTGAAACCAAATCCCCCAAAAATTCCACATTAAGTCATCGGCGACCTCCGCTCAGCATCTCGGTCCCTCAGCCCACCGTTTCTCAGTCGCCGGCGGAGTCCGATTCAGGCGATATCAGGCATTATAGAGGCGTGCGCCGACGGCCATGGGGGAAATTCGCGGCGGAGATTCGAGACCCGAATCGGAGAGGATCGAGGGTATGGCTGGGGACATTCGAGACTGCCATTGAAGGCGCCAGAGCTTATGATCGAGCTGCCTTCAAGATGCGTGGTTCCAAAGCTATTCTCAATTTCCCTCTTGAAGCTGATAATTGGTCGGGTTCTGACCCACCAGCGACATCTGGCCGGAAAAGGGAGAGAGACATTGAGACTGAAGAGAGACAACAAGTGGAGATTAAGGTTCTAAAGCAAGAAGAGCACTTGCCGGAATCTGACTGCACACTGGCGCCAGCCAGTAATGTATTGGGGGTTTGTCCCTTAACCCCGTCAAATTGGAGGGCCGTCTGGGAGGAGGGAGACATGGAGGGAATGTTCCATCTGCCACCGTTAACGCCGTTATCACCCCATCCTTGGATAGCATATTCTCAGCTTATTGTCTGA 834 50.96 MAEEASSLHLIHQQLLFDFESFEGFVSHVNVPSQTSTSDSSPSTSDIVPLSNFSDLHEDENNPFLLHCSTSAPSGFFQFETKSPKNSTLSHRRPPLSISVPQPTVSQSPAESDSGDIRHYRGVRRRPWGKFAAEIRDPNRRGSRVWLGTFETAIEGARAYDRAAFKMRGSKAILNFPLEADNWSGSDPPATSGRKRERDIETEERQQVEIKVLKQEEHLPESDCTLAPASNVLGVCPLTPSNWRAVWEEGDMEGMFHLPPLTPLSPHPWIAYSQLIV* 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6870573 6871530 + Vvi16g309 Vvi16g309 777958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g309 277 MobiDBLite consensus disorder prediction 179 204 - -
Vvi16g309 277 SUPERFAMILY DNA-binding domain 119 178 IPR016177 GO:0003677
Vvi16g309 277 ProSiteProfiles AP2/ERF domain profile. 119 177 IPR001471 GO:0003700|GO:0006355
Vvi16g309 277 Gene3D AP2/ERF domain 118 179 IPR036955 GO:0003700|GO:0006355
Vvi16g309 277 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 255 - -
Vvi16g309 277 MobiDBLite consensus disorder prediction 82 113 - -
Vvi16g309 277 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Vvi16g309 277 PRINTS Ethylene responsive element binding protein signature 159 179 IPR001471 GO:0003700|GO:0006355
Vvi16g309 277 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 3 255 - -
Vvi16g309 277 Pfam AP2 domain 119 169 IPR001471 GO:0003700|GO:0006355
Vvi16g309 277 CDD AP2 119 177 IPR001471 GO:0003700|GO:0006355
Vvi16g309 277 SMART rav1_2 119 183 IPR001471 GO:0003700|GO:0006355
Vvi16g309 277 MobiDBLite consensus disorder prediction 82 116 - -
Vvi16g309 277 MobiDBLite consensus disorder prediction 31 53 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14129 PF00847 AP2 1.20E-13 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g309 K09286 - vvi:100240781 548.895