Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g312 ATGGCAGATAAAGTTTCATCATTTCAACTCATCCACCAGCAACTCCTCTCCGACTTTGAATGTGTGGAAACCTTCTTTGAAACCAAATCCCAAAAGACTTCCACATTAAGTCAACGGCGACCCCCACTCAGCATCTCAGTTCCTCCGCCACCCACTTCTCAGCCCTCATCGGCGCCAGTTGCCGGCGAGATCAGGCACTATAGAGGGGTCAGGCGAAGGCCATGGGGGAAATTCGCGGCGGAGATTCGGGACTCAAATCGGAGAGGATCGAGGGTATGGCTGGGGACCTTCGAGACAGCCATTGAAGCCGCCAGGGCTTATGATCGAGCAGCTTTCAAGATGCGTGGTTCCAAAGCCATTCTCAATTTCCCCCTTGAAGCAGGGAATTGGTCGGGTTCTGACCCACCGGCCACATCCGGCCGTAAAAGGGTGAGAGATTTTGGGACCGAAGTGAGAGAACAGGTGGAGATAAAGGTTTTAAAGCAAGAAGAAGCGGCGGCGGCTAATGTTTTGCAGGCGGGTCCGCTAACGCCGTCAAGTTGGAGGACCGTTTGGGAGGAGAGAGACATGGAGGGGACATTCCATTTGCCTCCGTTAACCCCGTTATCACCCCATCCTTGGGTTGGATATTCTCGGCTCGTAACTTAA 648 53.24 MADKVSSFQLIHQQLLSDFECVETFFETKSQKTSTLSQRRPPLSISVPPPPTSQPSSAPVAGEIRHYRGVRRRPWGKFAAEIRDSNRRGSRVWLGTFETAIEAARAYDRAAFKMRGSKAILNFPLEAGNWSGSDPPATSGRKRVRDFGTEVREQVEIKVLKQEEAAAANVLQAGPLTPSSWRTVWEERDMEGTFHLPPLTPLSPHPWVGYSRLVT* 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6973916 6979318 - Vvi16g312 Vvi16g312 777961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g312 215 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Vvi16g312 215 ProSiteProfiles AP2/ERF domain profile. 66 124 IPR001471 GO:0003700|GO:0006355
Vvi16g312 215 CDD AP2 66 124 IPR001471 GO:0003700|GO:0006355
Vvi16g312 215 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Vvi16g312 215 PRINTS Ethylene responsive element binding protein signature 106 126 IPR001471 GO:0003700|GO:0006355
Vvi16g312 215 SMART rav1_2 66 130 IPR001471 GO:0003700|GO:0006355
Vvi16g312 215 MobiDBLite consensus disorder prediction 30 60 - -
Vvi16g312 215 Gene3D AP2/ERF domain 65 126 IPR036955 GO:0003700|GO:0006355
Vvi16g312 215 SUPERFAMILY DNA-binding domain 66 125 IPR016177 GO:0003677
Vvi16g312 215 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 193 - -
Vvi16g312 215 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 4 193 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14131 PF00847 AP2 6.70E-16 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g312 K09286 - vvi:100261410 319.316