Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g315 ATGGCTTCATCTCCTCAATCTTCAGCGCTCCACCACATCCGCCACCACCTCCTCTCTGATTCTGCCGACTCTACTACTGCTTCTACTTCATCTCCCCTTCTTCAACTTCTCTCTCATGCTGCTCCATCACATAACTCCCCCGTTTCTTCTCCTCAATCCTCAAATTCCTCCTTCTCTCCCAATTTCGCCCGTCGTAAGCCCACCCTCAGCATCGCGATTCCTCACCCTTCCCCTCCGCCCACCGCCGCTGATTCCGGCCACGAGAGGCACTACAGAGGCGTACGCCGCCGCCCCTGGGGGAAATTCGCAGCTGAGATCCGCGACCCCAACCGCCGAGGGTCTAGGGTTTGGCTTGGCACCTTCGACACCGCCGTCGAGGCCGCCAGGGCCTACGACCGAGCGGCCTTCAGGATGCGCGGCAGCAAAGCGATCCTCAACTTCCCTCTCGAAGCCGGAGCACCACCAGAGGCTTCGCAGCGGAACCCCAGCGTTCGGAAAAGGCTGAGAGAGACTGAGAAGAACGACAGAGAGACCGTGGAGGTCAAAGTAATAAAGAAGGAAGAGATAGTTGAGTCGCCGGTTTCGGACGTCACGTTGGCTAATACTTCGACGGCAGTCGCTTGTCCTTTAACGCCGTCATCCTGGACGGCCGTTTGGGATGGTGCAGATGGGAATGGTATTTTTAACGTGCCGCCTTTGTCGCCGTTATCACCCCTTGTGATGACATGA 729 57.48 MASSPQSSALHHIRHHLLSDSADSTTASTSSPLLQLLSHAAPSHNSPVSSPQSSNSSFSPNFARRKPTLSIAIPHPSPPPTAADSGHERHYRGVRRRPWGKFAAEIRDPNRRGSRVWLGTFDTAVEAARAYDRAAFRMRGSKAILNFPLEAGAPPEASQRNPSVRKRLRETEKNDRETVEVKVIKKEEIVESPVSDVTLANTSTAVACPLTPSSWTAVWDGADGNGIFNVPPLSPLSPLVMT* 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7044816 7045876 + Vvi16g315 Vvi16g315 777964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g315 242 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700|GO:0006355
Vvi16g315 242 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Vvi16g315 242 Pfam AP2 domain 90 140 IPR001471 GO:0003700|GO:0006355
Vvi16g315 242 Gene3D AP2/ERF domain 89 150 IPR036955 GO:0003700|GO:0006355
Vvi16g315 242 MobiDBLite consensus disorder prediction 21 94 - -
Vvi16g315 242 CDD AP2 90 148 IPR001471 GO:0003700|GO:0006355
Vvi16g315 242 ProSiteProfiles AP2/ERF domain profile. 90 148 IPR001471 GO:0003700|GO:0006355
Vvi16g315 242 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 6 227 - -
Vvi16g315 242 SUPERFAMILY DNA-binding domain 90 149 IPR016177 GO:0003677
Vvi16g315 242 MobiDBLite consensus disorder prediction 21 64 - -
Vvi16g315 242 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 227 - -
Vvi16g315 242 SMART rav1_2 90 154 IPR001471 GO:0003700|GO:0006355
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14133 PF00847 AP2 8.40E-16 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g315 K09286 - vvi:100254504 389.423