Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g360 ATGGAGGCTAAAGAAATTATTGAAGAAAAACAAGAACTTGCATTGGCGCTTCCCTTACCTTCCACCATTGCAGTGGCTATCAATGGAAAGAAAAAAAGCAAATATGTTGTTAGGTGGGCATTAGAGAAGTTTGTTCCCGAGGGATTGCATATGTTCAAGATGTTACATGTCCGTCCGAAGATAACCTCAGTCCCTACGCCGATGGGAAATTCGATTCCTCTTTCACAAGTGCGAGATGATGTAGCAGCTGCTTACCTGGAAGAAATGGGATGGCAGACAAGTGAAATGCTTCTTCCTTACAAGACAATGTTTTTGCATAAAAAGGTGCAAGTGGATGTTGTTGTGATTGAATCAGATGATGTTGCAAAGGCAATAGCAGAGGAGATAGCAAAAAGCACTATCCATAAGCTTGTTATTGGGGCTTCATCTAGTGGCATGTTTTCAAGGAAAGTTAAGGGACAAAGTCTGTCTTTGAGAATCTCAGAATGCACTCCAAGCTTCTGTACAGTCTATACTGTTTCAAAAGGACAATTATCCTCTGTGCGCCCGTCGGATTCAGATAAAAATGGAAGCATTAAAGAGGACAGTAGTGATGCAAGTTCTACCACCAGTTCTTCAAGTCACACTTCCAGCCCACATGCAGGTTCTGCAGCTTCATATTCTCATTTTCATTCTCCTTCACTACCAATGCAACGCTTTCAAGCTCTTTCAACTATTAACCGGACCCTTCTCCATACAAGAACAGGTTCAATTGAAACCAACTCTTCTAGACATATTGGTTATGCACCTAGTCAGGTTTCTAGTGCTAGAAGCTTCTTGACAGACGATCAATCATGGATTTCTGATCAAGCTTCCACCTCAGATGCTTTTACAGAGTCCTCGTCAGGAAGTCAGGTGAATATAAATTTTGAGCTAGAAAAACTGAGAGTTGAACTTAGACATGTCCGAGGGATATATGCAATGGCTCAAAGTGAGAACATTGATGCTTCTCGGAAGCTAAACGATCTAAGCAAGCGCCGATTGGAGGAAGCAGATAAGCTTAAGGAAATTAAACTCAAGGAGGAGGAAGCCAGAGAATTAGCAAGAAAAGAGAAGGAGAAATATGAAGCTGCAAAAAGGGAAGCCGAGTACGCAAGGGAATGTGCTGAAAAAGAAGCGTTACAAAGGAAAGAAGCAGAGATCAAAGCCTTGCATGATGTCAAAGAGAAAGAAAAGCTTGAAAATGCACTTGTTGGTCCAGTGCAGTCATATCAGGAGTTCACATGGGAAGAAATTGTGTCTGCTACCTCATCATTCTCTGAAAACCTTCAGATTGGGAAGGGGGCGCATGGAACTGTCTACAGGTGCAATCTGCATCATACAACTGCAGCAGTGAAAGTTCTCCACTCAAAGGAGGGTCATAGAACCAAGGAATTCCAGCAGGAGCTTGATGTATTAAGTAAAATTCGTCATCCTCATCTGCTGCTTCTTCTAGGCGCCTGTTCTGATCATGGTTGCCTAGTGTATGAGTACATGGAAAATGGTAGCTTGGAAGAGAGGTTGCTGCAGAAATATAATACAGCCCCAATTCCATGGTTTGAGAGATACCGAATTGCTTGGGAAGTAGCCTCAACCCTTGTCTTTCTTCACAACTCAAAGCCTAAATCAATCATCCATCGTGATCTGAAACCAGCAAACATCTTGCTTGATCATAACTTGGTGAGCAAGATCGGTGATGTTGGCCTTTCAACAATGCTTAATCTGGACTCTTCTATATGCAACATAAACACAGGTCCTGTTGGAACACTTTGCTACATAGATCCTGAATATCAACGGACTGGTTTAGTCTCTCCAAAATCCGATGTTTATGCTTTTGGGATGGTGGTTTTGCAGTTGCTGACTGCAAAACCAGCAATAGCACTAGCCCACCTGGTGGAAACAGCAATTCAAGATGACCAACTAATGAAGATTTTGGACCCAATGGCTGGGCAATGGCCAATGAAAGAAACAAAAGAATTGGCTCTATTAGGATTAAGCTGTCTAGAGCTTCGCCGAAGAGACAGGCCCGATTTAAAAGATGAGGTACTCCCTGCACTGGAGCGATTAAAAGATGCTGCTGACAGGTCCCGAGATTCAGCTCCCAAGGTTCAGTTGGCACCTCCTAACCATTTTGTCTGCCCAATACTTAAGGATGTAATGCATGACCCTTGTGTTGCTGCGGATGGATACACCTATGACCGAAGAGCAATAGAGAAATGGGTGGAAGAGAATGACAACTCGCCCATGACAAATTTGGCTTTGCCAAATAAGAATCTAATACCCAATTACACACTTCTTTCTGCAATTATGGAATGGAAGTCCCAAAGCAACCAATAA 2355 42.72 MEAKEIIEEKQELALALPLPSTIAVAINGKKKSKYVVRWALEKFVPEGLHMFKMLHVRPKITSVPTPMGNSIPLSQVRDDVAAAYLEEMGWQTSEMLLPYKTMFLHKKVQVDVVVIESDDVAKAIAEEIAKSTIHKLVIGASSSGMFSRKVKGQSLSLRISECTPSFCTVYTVSKGQLSSVRPSDSDKNGSIKEDSSDASSTTSSSSHTSSPHAGSAASYSHFHSPSLPMQRFQALSTINRTLLHTRTGSIETNSSRHIGYAPSQVSSARSFLTDDQSWISDQASTSDAFTESSSGSQVNINFELEKLRVELRHVRGIYAMAQSENIDASRKLNDLSKRRLEEADKLKEIKLKEEEARELARKEKEKYEAAKREAEYARECAEKEALQRKEAEIKALHDVKEKEKLENALVGPVQSYQEFTWEEIVSATSSFSENLQIGKGAHGTVYRCNLHHTTAAVKVLHSKEGHRTKEFQQELDVLSKIRHPHLLLLLGACSDHGCLVYEYMENGSLEERLLQKYNTAPIPWFERYRIAWEVASTLVFLHNSKPKSIIHRDLKPANILLDHNLVSKIGDVGLSTMLNLDSSICNINTGPVGTLCYIDPEYQRTGLVSPKSDVYAFGMVVLQLLTAKPAIALAHLVETAIQDDQLMKILDPMAGQWPMKETKELALLGLSCLELRRRDRPDLKDEVLPALERLKDAADRSRDSAPKVQLAPPNHFVCPILKDVMHDPCVAADGYTYDRRAIEKWVEENDNSPMTNLALPNKNLIPNYTLLSAIMEWKSQSNQ* 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9058541 9074082 + Vvi16g360 Vvi16g360 778009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g360 784 Pfam U-box domain 714 782 IPR003613 GO:0004842|GO:0016567
Vvi16g360 784 MobiDBLite consensus disorder prediction 195 222 - -
Vvi16g360 784 Gene3D Transferase(Phosphotransferase) domain 1 505 711 - -
Vvi16g360 784 ProSiteProfiles Protein kinase domain profile. 432 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g360 784 SUPERFAMILY RING/U-box 702 782 - -
Vvi16g360 784 Coils Coil 387 407 - -
Vvi16g360 784 ProSitePatterns Protein kinases ATP-binding region signature. 438 459 IPR017441 GO:0005524
Vvi16g360 784 ProSitePatterns Serine/Threonine protein kinases active-site signature. 550 562 IPR008271 GO:0004672|GO:0006468
Vvi16g360 784 Coils Coil 319 385 - -
Vvi16g360 784 ProSiteProfiles U-box domain profile. 712 784 IPR003613 GO:0004842|GO:0016567
Vvi16g360 784 Pfam Protein kinase domain 434 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g360 784 MobiDBLite consensus disorder prediction 179 222 - -
Vvi16g360 784 CDD STK_N 22 176 - -
Vvi16g360 784 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 21 153 - -
Vvi16g360 784 SMART serkin_6 432 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g360 784 SUPERFAMILY Protein kinase-like (PK-like) 414 686 IPR011009 -
Vvi16g360 784 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 21 779 - -
Vvi16g360 784 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 712 784 IPR013083 -
Vvi16g360 784 Gene3D Phosphorylase Kinase; domain 1 416 504 - -
Vvi16g360 784 PANTHER OS02G0152300 PROTEIN 21 779 - -
Vvi16g360 784 CDD RING-Ubox_WDSUB1_like 717 757 - -
Vvi16g360 784 Gene3D HUPs 21 173 IPR014729 -
Vvi16g360 784 SMART Ubox_2 716 778 IPR003613 GO:0004842|GO:0016567
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76266 PF00069 Pkinase 4.60E-39 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g360 - - vvi:100242290 1429.08