Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g366 ATGATGGATCATAGGGGGGTGAGCATTATTATTAACAGAATGATGGAACATTCCCCATTGGATTTCCCTTTGTCAAACTCTATACTTCAAATTAAAATAATTGGAATCACCCTTGTCTTCTCTGCCCCGCTTCCTCTTCAGCTCATCTCCCTTCTCGCCTTAAAGTCCTCCCTCAAAGACCCCCTCTCCACCCTCCATGGCTGGGACCCCACCCCCTCCCTCTCCACCCCTGCCTTCCACCGCCCCCTCTGGTGCTCATGGTCCGGCGTCAAGTGCGACCCTAAAACTTCTCACGTCACTTCTCTCGACCTCTCTCGCCGCAACCTCTCCGGCACTATACCCCCCGAAATTCGCTACTTGTCCACCTTGAACCACCTCAATTTGAGCGGAAATGCCTTCGATGGTCCCTTCCCACCCTCTGACATCATCCAGCTCCGCTACCTCGAGTTCCTCAACCTGGCTGGGAATGCTCTGGATGGCCCCATACCTCCCGATTATGCTAGGCTGACTGCTCTTAAAAGTTTGGATTTATCCAATAATCAGCTTACAGGGAGTATTCCGGAGCAATTCACCTCTCTCAAGGAGCTCACCATCTTGAGCCTCATGAACAACGAGCTCGCCGGAGAAATACCGCAAGGCATTGGCGACCTCCCAAACTTGGACACCCTATCTCTCTGGAACAACTCTTTGACCGGTACTCTCCCTCAAAATCTAGGATCAAACGCCAAGTTGATGAAGCTGGACGTGTCCTCAAACTTCCTCACTGGCTCCATTCCTCTAAACCTTTGCCTTGGAAACCATTTGATAAAACTCATCCTCTTCGGCAACAGGCTTGTATCGGAGCTCCCCAACTCCTTAGCAAATTGTACTTCATTGATGAGGTTCCGATACTTGAACATATCCGAAAATGCTTTCGACAGCCACATTCCTTGGGATATTGGCCACTGCATGAAGCTTTTGAGCTTGAATCTTCGTGACAACTCGCTTACTGGTATAATTCCATGGGAGATCTCCACGCTGCCCTCCATCACCGACGTTGATCTCTCTCATAATTTTCTCACCGGCACCATTCCTTCCAATTTCGATAATTGCAGTACTCTAGAGAGCTTCAACGTCTCATTCAATCTTCTCACCGTTGTGAGTAAGCCCTGCGCCGCGGGAACGGAGGCAGCGACGGCGGAAGACATGGGACCGTGGAAATTGACGGCGTTCCAGAGGTTGAATTTCTCGGCGGATGATGTGGTGGAGTGTATATCAATGACGGATAAGATAATAGGGATGGGGTCGACCGGAACAGTGTACAAGGCGGAGATGCGAGGTGGGGAGATGATAGCGGTGAAGAAGCTGTGGGGAAAACAGAAAGAGACGGTGAGGAAGAGAAGAGGAGTGGTGGCGGAGGTGGATGTGCTGGGAAATGTGAGGCACAGGAACATAGTGAGACTGTTAGGGTGGTGCAGCAACAGCGATAGCACAATGCTGCTCTACGAGTACATGCCCAATGGGAGCTTGGACGACTTGCTGCATGGCAAGAACAAGGGTGACAACTTGGTAGCCGACTGGTACACCAGGTACAAAATCGCTCTCGGCGTGGCTCAGGGCATCTGCTATCTTCACCATGACTGTGATCCCGTCATTGTTCATCGTGATCTCAAGCCCAGCAACATTCTTCTCGACGCCGATATGGAGGCCAGAGTCGCCGATTTTGGCGTCGCCAAGCTCATTCAATGCGATGAATCCATGTCTGTAATTGCCGGTTCATATGGCTACATAGCACCAGAATACGCTTATACGCTCCAAGTGGATGAAAAGAGCGATATCTATAGCTACGGAGTGGTGCTGCTGGAGATACTGAGCGGAAAGCGGTCGGTGGAGGGGGAGTTTGGGGAGGGAAACAGCATCGTGGATTGGGTGAGGTTGAAGATAAAGAACAAGAACGGGGTGGACGAAGTGCTAGACAAGAATGCGGGTGCATCATGTCCCTCCGTCAGGGAAGAGATGATGCTGTTGCTCAGAGTTGCTTTGCTTTGCACCAGCCGCAATCCCGCCGACCGACCTTCCATGAGGGATGTTGTCTCCATGCTGCAGGAAGCCAAGCCTAAGAGGAAGTTGCCTGCAAGTGTCGGCAGCGGCGGTGCTGCTGCTGCTGCTGCTGCTACTCCCTTGCCACAAAAGCAAACTGTGGACTGTTAA 2190 51.51 MMDHRGVSIIINRMMEHSPLDFPLSNSILQIKIIGITLVFSAPLPLQLISLLALKSSLKDPLSTLHGWDPTPSLSTPAFHRPLWCSWSGVKCDPKTSHVTSLDLSRRNLSGTIPPEIRYLSTLNHLNLSGNAFDGPFPPSDIIQLRYLEFLNLAGNALDGPIPPDYARLTALKSLDLSNNQLTGSIPEQFTSLKELTILSLMNNELAGEIPQGIGDLPNLDTLSLWNNSLTGTLPQNLGSNAKLMKLDVSSNFLTGSIPLNLCLGNHLIKLILFGNRLVSELPNSLANCTSLMRFRYLNISENAFDSHIPWDIGHCMKLLSLNLRDNSLTGIIPWEISTLPSITDVDLSHNFLTGTIPSNFDNCSTLESFNVSFNLLTVVSKPCAAGTEAATAEDMGPWKLTAFQRLNFSADDVVECISMTDKIIGMGSTGTVYKAEMRGGEMIAVKKLWGKQKETVRKRRGVVAEVDVLGNVRHRNIVRLLGWCSNSDSTMLLYEYMPNGSLDDLLHGKNKGDNLVADWYTRYKIALGVAQGICYLHHDCDPVIVHRDLKPSNILLDADMEARVADFGVAKLIQCDESMSVIAGSYGYIAPEYAYTLQVDEKSDIYSYGVVLLEILSGKRSVEGEFGEGNSIVDWVRLKIKNKNGVDEVLDKNAGASCPSVREEMMLLLRVALLCTSRNPADRPSMRDVVSMLQEAKPKRKLPASVGSGGAAAAAAATPLPQKQTVDC* 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 9543758 9549773 - Vvi16g366 Vvi16g366 778015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g366 729 Gene3D Ribonuclease Inhibitor 213 294 IPR032675 -
Vvi16g366 729 ProSitePatterns Serine/Threonine protein kinases active-site signature. 545 557 IPR008271 GO:0004672|GO:0006468
Vvi16g366 729 SUPERFAMILY L domain-like 78 381 - -
Vvi16g366 729 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 15 153 - -
Vvi16g366 729 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 143 297 - -
Vvi16g366 729 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 299 378 - -
Vvi16g366 729 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 393 713 - -
Vvi16g366 729 Gene3D Phosphorylase Kinase; domain 1 396 497 - -
Vvi16g366 729 Pfam Protein kinase domain 422 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g366 729 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE TDR ISOFORM X3 299 378 - -
Vvi16g366 729 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE TDR ISOFORM X3 143 297 - -
Vvi16g366 729 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE TDR ISOFORM X3 393 713 - -
Vvi16g366 729 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE TDR ISOFORM X3 15 153 - -
Vvi16g366 729 ProSiteProfiles Leucine-rich repeat profile. 171 194 IPR001611 GO:0005515
Vvi16g366 729 SMART serkin_6 419 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g366 729 SMART LRR_typ_2 340 363 IPR003591 -
Vvi16g366 729 SMART LRR_typ_2 217 241 IPR003591 -
Vvi16g366 729 SMART LRR_typ_2 169 192 IPR003591 -
Vvi16g366 729 ProSitePatterns Protein kinases ATP-binding region signature. 425 448 IPR017441 GO:0005524
Vvi16g366 729 Gene3D Ribonuclease Inhibitor 165 212 IPR032675 -
Vvi16g366 729 Gene3D Ribonuclease Inhibitor 48 164 IPR032675 -
Vvi16g366 729 Gene3D Transferase(Phosphotransferase) domain 1 498 707 - -
Vvi16g366 729 ProSiteProfiles Protein kinase domain profile. 419 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g366 729 Gene3D Ribonuclease Inhibitor 296 378 IPR032675 -
Vvi16g366 729 SUPERFAMILY Protein kinase-like (PK-like) 422 694 IPR011009 -
Vvi16g366 729 Pfam Leucine rich repeat 168 206 IPR001611 GO:0005515
Vvi16g366 729 Pfam Leucine Rich Repeat 318 339 IPR001611 GO:0005515
Vvi16g366 729 PRINTS Leucine-rich repeat signature 172 185 - -
Vvi16g366 729 PRINTS Leucine-rich repeat signature 340 353 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76268 PF00069 Pkinase 4.70E-49 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g366 - - vvi:100266344 876.315