Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g378 ATGAGACCGGTGTTAGGGTTTGTGGTTTATGAAATTGTTTTCATGGAAGGGAAGCTGGTGCGTCTGCAGTTTCCTTTGCTGGTGATTTCTTGCCTTGTATTCCAGCTCCGTGCCTCAGATGCTATCTTGCATGAATCACGGCGGTCACTTGAGTCTAGGAAGGAAGCATTGTGCCCTCCTGATTGGATCACTGGCCCAGATAAGAATAAGTGCTTTAGGTATATAGGAAACCCTCAATCATGGGATGTATCGGAGGCCTACTGTAAAAGTTTAGGGGGACACTTGGCAGCACTGACATCATTCCAAGAACTAAGCTCTGTTCAAAATCTATGTGGTGAGAGCAACAATGGCTGCTGGGTTGGAGGGAGAGGTGTCAACTCTACTTTTGGTGCTGGTTGGAAGTGGTCTGACAATACATCACATTGGAATGAATCAATCTTTCCCAATTGCACCAACTCTTCATGCCACATAAAAAATTCAGTTGATTCTTGTACACTGGTGACAAATGGATCCACTTTTCTCATTGGTGAGAGATGCAACATGTCTCATGCTTCTATATGCATGATTGATATAGAGAACAAATGTTACCACATGCACTGCCACAAGGAATATCTTATTATCCTTGCAGTTGTTAGTGGGTTGATCCTCAGCACGACATTAGCTGTTGTGATTTGGCTCCTTGCATATAGGCGTAGCAAGAGGCGTAGAAGATCTCGCAAACTCTCTAATCCAGCAGCATCTGCATTAGTTCCCCCTTCATGGAAGGTTTTCACGAATGAGGAACTGAGGTCAATTACAAAGAATTTCAGTGAAGGAAACCGGCTTCTTGGAGATGCCAAAACAGGTGGCACGTATAGCGGGCTTCTACCTGATGGATCAAGGGTGGCGGTTAAAAGGCTGAAGAGGTCTACTTTCCAGAGGAAAAAGGAGTTCTATTCTGAGATTGGAAGGGTTGCTAGGCTACACCATCCAAATTTGGTTGCTGTGAAAGGGTGCTGCTATGACCATGGTGACCGCTACATTGTTTATGAGTTTATAATCAATGGACCCTTGGACAGGTGGCTACACCACATACCAAGGGGAGGCAGAAGTTTGGATTGGGCCATGAGAATGAAAATTGCCACAACTCTTGCACAAGGAATTGCGTTTCTGCATGACAAGGTGAAGCCACATGTTGTACATCGGGATATACGAGCAAGTAATGTACTGCTTGATGAAGAGTTTGGTGCACACCTAATGGGGGTTGGCCTCTCAAAGTTTGTTTCTTGGGAAGTGATGCATCAGGGGACAGTAATGGCCGGTGGGACGTATGGATACCTTGCTCCAGAATTTGTGTACAGAAATGAGCTTACAACCAAAAGTGATGTTTACAGTTTTGGAGTGCTGCTGCTTGAAATTGTGAGTGGACGTAGGCCTGCACAGGCAGTTGACTCAGTAGGTTGGCAAAGTATATTTGAATGGGCCACACCTCTGCATGTCCCATCTATGCGTCCCAGAATGTCCCACGTCGTCCATCAACTGCAACAGTTGGCTCAGCCACCTATTGCCAAGTAA 1554 45.56 MRPVLGFVVYEIVFMEGKLVRLQFPLLVISCLVFQLRASDAILHESRRSLESRKEALCPPDWITGPDKNKCFRYIGNPQSWDVSEAYCKSLGGHLAALTSFQELSSVQNLCGESNNGCWVGGRGVNSTFGAGWKWSDNTSHWNESIFPNCTNSSCHIKNSVDSCTLVTNGSTFLIGERCNMSHASICMIDIENKCYHMHCHKEYLIILAVVSGLILSTTLAVVIWLLAYRRSKRRRRSRKLSNPAASALVPPSWKVFTNEELRSITKNFSEGNRLLGDAKTGGTYSGLLPDGSRVAVKRLKRSTFQRKKEFYSEIGRVARLHHPNLVAVKGCCYDHGDRYIVYEFIINGPLDRWLHHIPRGGRSLDWAMRMKIATTLAQGIAFLHDKVKPHVVHRDIRASNVLLDEEFGAHLMGVGLSKFVSWEVMHQGTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVSGRRPAQAVDSVGWQSIFEWATPLHVPSMRPRMSHVVHQLQQLAQPPIAK* 518
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
16 10082751 10090378 + Vvi16g378 Vvi16g378 778027
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g378 517 Pfam Lectin C-type domain 78 188 IPR001304 -
Vvi16g378 517 SMART tyrkin_6 269 507 IPR020635 GO:0004713|GO:0006468
Vvi16g378 517 ProSiteProfiles Protein kinase domain profile. 270 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g378 517 Gene3D - 35 193 IPR016186 -
Vvi16g378 517 Gene3D Phosphorylase Kinase; domain 1 247 345 - -
Vvi16g378 517 ProSiteProfiles C-type lectin domain profile. 67 188 IPR001304 -
Vvi16g378 517 PANTHER - 15 491 - -
Vvi16g378 517 PANTHER - 492 512 - -
Vvi16g378 517 Pfam Protein tyrosine and serine/threonine kinase 276 480 IPR001245 GO:0004672|GO:0006468
Vvi16g378 517 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 492 512 - -
Vvi16g378 517 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 491 - -
Vvi16g378 517 SUPERFAMILY C-type lectin-like 53 190 IPR016187 -
Vvi16g378 517 Gene3D Transferase(Phosphotransferase) domain 1 347 514 - -
Vvi16g378 517 CDD CLECT 70 187 - -
Vvi16g378 517 ProSitePatterns Tyrosine protein kinases specific active-site signature. 392 404 IPR008266 GO:0004672|GO:0006468
Vvi16g378 517 SMART CLECT_2 58 188 IPR001304 -
Vvi16g378 517 SUPERFAMILY Protein kinase-like (PK-like) 244 507 IPR011009 -
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76269 PF07714 PK_Tyr_Ser-Thr 1.50E-36 CL0016 Vvi PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g378 - - vvi:100245331 1010.75