Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi16g378 | ATGAGACCGGTGTTAGGGTTTGTGGTTTATGAAATTGTTTTCATGGAAGGGAAGCTGGTGCGTCTGCAGTTTCCTTTGCTGGTGATTTCTTGCCTTGTATTCCAGCTCCGTGCCTCAGATGCTATCTTGCATGAATCACGGCGGTCACTTGAGTCTAGGAAGGAAGCATTGTGCCCTCCTGATTGGATCACTGGCCCAGATAAGAATAAGTGCTTTAGGTATATAGGAAACCCTCAATCATGGGATGTATCGGAGGCCTACTGTAAAAGTTTAGGGGGACACTTGGCAGCACTGACATCATTCCAAGAACTAAGCTCTGTTCAAAATCTATGTGGTGAGAGCAACAATGGCTGCTGGGTTGGAGGGAGAGGTGTCAACTCTACTTTTGGTGCTGGTTGGAAGTGGTCTGACAATACATCACATTGGAATGAATCAATCTTTCCCAATTGCACCAACTCTTCATGCCACATAAAAAATTCAGTTGATTCTTGTACACTGGTGACAAATGGATCCACTTTTCTCATTGGTGAGAGATGCAACATGTCTCATGCTTCTATATGCATGATTGATATAGAGAACAAATGTTACCACATGCACTGCCACAAGGAATATCTTATTATCCTTGCAGTTGTTAGTGGGTTGATCCTCAGCACGACATTAGCTGTTGTGATTTGGCTCCTTGCATATAGGCGTAGCAAGAGGCGTAGAAGATCTCGCAAACTCTCTAATCCAGCAGCATCTGCATTAGTTCCCCCTTCATGGAAGGTTTTCACGAATGAGGAACTGAGGTCAATTACAAAGAATTTCAGTGAAGGAAACCGGCTTCTTGGAGATGCCAAAACAGGTGGCACGTATAGCGGGCTTCTACCTGATGGATCAAGGGTGGCGGTTAAAAGGCTGAAGAGGTCTACTTTCCAGAGGAAAAAGGAGTTCTATTCTGAGATTGGAAGGGTTGCTAGGCTACACCATCCAAATTTGGTTGCTGTGAAAGGGTGCTGCTATGACCATGGTGACCGCTACATTGTTTATGAGTTTATAATCAATGGACCCTTGGACAGGTGGCTACACCACATACCAAGGGGAGGCAGAAGTTTGGATTGGGCCATGAGAATGAAAATTGCCACAACTCTTGCACAAGGAATTGCGTTTCTGCATGACAAGGTGAAGCCACATGTTGTACATCGGGATATACGAGCAAGTAATGTACTGCTTGATGAAGAGTTTGGTGCACACCTAATGGGGGTTGGCCTCTCAAAGTTTGTTTCTTGGGAAGTGATGCATCAGGGGACAGTAATGGCCGGTGGGACGTATGGATACCTTGCTCCAGAATTTGTGTACAGAAATGAGCTTACAACCAAAAGTGATGTTTACAGTTTTGGAGTGCTGCTGCTTGAAATTGTGAGTGGACGTAGGCCTGCACAGGCAGTTGACTCAGTAGGTTGGCAAAGTATATTTGAATGGGCCACACCTCTGCATGTCCCATCTATGCGTCCCAGAATGTCCCACGTCGTCCATCAACTGCAACAGTTGGCTCAGCCACCTATTGCCAAGTAA | 1554 | 45.56 | MRPVLGFVVYEIVFMEGKLVRLQFPLLVISCLVFQLRASDAILHESRRSLESRKEALCPPDWITGPDKNKCFRYIGNPQSWDVSEAYCKSLGGHLAALTSFQELSSVQNLCGESNNGCWVGGRGVNSTFGAGWKWSDNTSHWNESIFPNCTNSSCHIKNSVDSCTLVTNGSTFLIGERCNMSHASICMIDIENKCYHMHCHKEYLIILAVVSGLILSTTLAVVIWLLAYRRSKRRRRSRKLSNPAASALVPPSWKVFTNEELRSITKNFSEGNRLLGDAKTGGTYSGLLPDGSRVAVKRLKRSTFQRKKEFYSEIGRVARLHHPNLVAVKGCCYDHGDRYIVYEFIINGPLDRWLHHIPRGGRSLDWAMRMKIATTLAQGIAFLHDKVKPHVVHRDIRASNVLLDEEFGAHLMGVGLSKFVSWEVMHQGTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVSGRRPAQAVDSVGWQSIFEWATPLHVPSMRPRMSHVVHQLQQLAQPPIAK* | 518 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 10082751 | 10090378 | + | Vvi16g378 | Vvi16g378 | 778027 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi16g378 | 517 | Pfam | Lectin C-type domain | 78 | 188 | IPR001304 | - | |
Vvi16g378 | 517 | SMART | tyrkin_6 | 269 | 507 | IPR020635 | GO:0004713|GO:0006468 | |
Vvi16g378 | 517 | ProSiteProfiles | Protein kinase domain profile. | 270 | 517 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi16g378 | 517 | Gene3D | - | 35 | 193 | IPR016186 | - | |
Vvi16g378 | 517 | Gene3D | Phosphorylase Kinase; domain 1 | 247 | 345 | - | - | |
Vvi16g378 | 517 | ProSiteProfiles | C-type lectin domain profile. | 67 | 188 | IPR001304 | - | |
Vvi16g378 | 517 | PANTHER | - | 15 | 491 | - | - | |
Vvi16g378 | 517 | PANTHER | - | 492 | 512 | - | - | |
Vvi16g378 | 517 | Pfam | Protein tyrosine and serine/threonine kinase | 276 | 480 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi16g378 | 517 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED | 492 | 512 | - | - | |
Vvi16g378 | 517 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED | 15 | 491 | - | - | |
Vvi16g378 | 517 | SUPERFAMILY | C-type lectin-like | 53 | 190 | IPR016187 | - | |
Vvi16g378 | 517 | Gene3D | Transferase(Phosphotransferase) domain 1 | 347 | 514 | - | - | |
Vvi16g378 | 517 | CDD | CLECT | 70 | 187 | - | - | |
Vvi16g378 | 517 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 392 | 404 | IPR008266 | GO:0004672|GO:0006468 | |
Vvi16g378 | 517 | SMART | CLECT_2 | 58 | 188 | IPR001304 | - | |
Vvi16g378 | 517 | SUPERFAMILY | Protein kinase-like (PK-like) | 244 | 507 | IPR011009 | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76269 | PF07714 | PK_Tyr_Ser-Thr | 1.50E-36 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi16g378 | - | - | vvi:100245331 | 1010.75 |