Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g404 ATGGCTCCCAACTCGCTGTCAGTCCGCTTGGAAGAATCCTTTACCCGCAACGCCCTCAGATCCTACTTGGCCGAGTTCATCTCCACTTTCATCTTCGTTTTTGCCGCTGTCGGATCCGCTATGTCTTCCAGGAAACTGATGCCGGATGCCACGTCTGATCCATCTAGTCTGCTTGTGGTTGCACTGGCAAATGCGTTTGCATTGTCGTCGGCAGTGTATATTGCTGCAGGGATCTCGGGAGGACATGTGAATCCGGCTGTCACGTTCGGATTGGCGGTGGGAGGCCACGTCAGCATCCCCACTGCCATGTTGTACTGGATTTCACAGATGCTGGGTGCCACCATGGCTTGCCTGTTCCTGAGAGTCACCACTGTTGGTCAGCACGTTCCGACCCATGCAATAGCGGAGGAAATGACCGGGTTCGGAGCATCCGTATTAGAGGGCGTCCTGACATTCGCACTTGTGTACACGGTCTACGCTGCAGGTGACCCGAGGCGAGGCCCACTGGGATCCATCGGACCCCTTGCCATCGGGCTAATAGAGGGAGCCAATGTGCTGGCGGCCGGGCCATTCACGGGAGGGTCTATGAACCCGGCATCCTCATTCGGGTCAGCCCTAGTTGGAGGCACCTTCAAGAACCAGGCGGTTTACTGGGTGGGACCCTTGATTGGTGGCGCACTGGCTGGGCTGCTGTATGAAAATGTGGTTTTCCCTCCTCAAGACACTGCAATTTCTCAAGATACTGGAATTACAATTGTAAAATTATTTTGGTTATTTAAATTTCTCAAATTTTGTCAAATAAAAGCCAAATCTACAAGATCATCCCACTGTGTACATGAAAGATAA 846 52.36 MAPNSLSVRLEESFTRNALRSYLAEFISTFIFVFAAVGSAMSSRKLMPDATSDPSSLLVVALANAFALSSAVYIAAGISGGHVNPAVTFGLAVGGHVSIPTAMLYWISQMLGATMACLFLRVTTVGQHVPTHAIAEEMTGFGASVLEGVLTFALVYTVYAAGDPRRGPLGSIGPLAIGLIEGANVLAAGPFTGGSMNPASSFGSALVGGTFKNQAVYWVGPLIGGALAGLLYENVVFPPQDTAISQDTGITIVKLFWLFKFLKFCQIKAKSTRSSHCVHER* 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 11247839 11248951 - Vvi16g404 Vvi16g404 778053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g404 281 ProSitePatterns MIP family signature. 82 90 IPR022357 -
Vvi16g404 281 SUPERFAMILY Aquaporin-like 12 242 IPR023271 -
Vvi16g404 281 Gene3D Glycerol uptake facilitator protein. 5 246 IPR023271 -
Vvi16g404 281 Pfam Major intrinsic protein 17 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g404 281 PRINTS Major intrinsic protein family signature 20 39 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g404 281 PRINTS Major intrinsic protein family signature 64 88 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g404 281 PRINTS Major intrinsic protein family signature 101 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g404 281 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g404 281 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g404 281 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g404 281 PANTHER AQUAPORIN TIP5-1-RELATED 5 243 - -
Vvi16g404 281 PANTHER AQUAPORIN-8 5 243 IPR034294 -
Vvi16g404 281 CDD MIP 20 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g404 K09873 - vvi:100246683 459.529