Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g431 ATGCTAGTGGGTGATGGGCTGAGGAACACCATTATTACTGGCAGCCGCAGCGTTGGAGGAGGCTTCACCACCTTCAACTCTGCCACAGTTGCTGTGACTGGTGAAGGTTTCATAGCCCGTGGCATCACATTCCGCAACACGGCCGGTCCACAGAATCACCAAGCAGTGGCGCTCCGGTCAGGCTCCGACCTCTCTGTCTTCTACCAATGCTCCTTTGAAGGATACCAAGACACCCTCTATGTCCACTCGCAGCGACAATTCTACAAAGAATGCTACATCTATGGAACAGTAGACTTCATATTTGGCAACGCAGCAGTGGTCCTCCAAAACTGCATGATCTATGCCAGGAGGCCTATGGATAAACAAAAAAATGTAGTCACAGCACAAGGCAGAACTGATCCAAACCAAAACACCGGGATATCCATCCATAACAGCCGTGTCATGGCTGCAACCGACCTTAAACCGGTGCTGAGTTCCTTCAAGACCTACTTGGGACGGCCATGGAAGGAGTACTCACGGACTGTTTACCTTGGAACTTACCTTGATACCTTGGTGGACTCTGCAGGATGGTTGGAATGGGATGGAAACTTTGCCCTGAATACTTTGTACTATGGCGAGTATAAGAATTTCGGGCCTGGTTCATCGACCAGTGGGAGGGTGAAGTGGCGAGGCTATCGGGTTATAACCAGTGCAACTGAAGCTTCCAAGTTCAGTGTCGCCAACTTTATAGCTGGCCAGTCATGGTTACCGGCCACTGGTGTCCCGTTCAGGTCTGGTCTATGA 783 50.7 MLVGDGLRNTIITGSRSVGGGFTTFNSATVAVTGEGFIARGITFRNTAGPQNHQAVALRSGSDLSVFYQCSFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARRPMDKQKNVVTAQGRTDPNQNTGISIHNSRVMAATDLKPVLSSFKTYLGRPWKEYSRTVYLGTYLDTLVDSAGWLEWDGNFALNTLYYGEYKNFGPGSSTSGRVKWRGYRVITSATEASKFSVANFIAGQSWLPATGVPFRSGL* 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 12106452 12109166 - Vvi16g431 Vvi16g431 778080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g431 260 ProSitePatterns Pectinesterase signature 2. 93 102 IPR033131 -
Vvi16g431 260 PANTHER PECTINESTERASE 1 259 - -
Vvi16g431 260 Pfam Pectinesterase 1 245 IPR000070 GO:0030599|GO:0042545
Vvi16g431 260 PANTHER PECTINESTERASE 1 259 - -
Vvi16g431 260 Gene3D - 1 260 IPR012334 -
Vvi16g431 260 SUPERFAMILY Pectin lyase-like 1 258 IPR011050 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g431 K01051 - vvi:100262077 534.258