Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g459 ATGCATGACCCACCGCCACCTGCCGTTGACTCCTCCCCCACAGCAGCGCCGTCGGCGAGTCTCAAGGCAAAGTTGAGGAAGATTCCTCCCATTCCCGTTCGGCGAAACCCTAGAGACGACTCTGTTGACGATAAGGAGGAGGAGGGCGATGGAGAGAGTGAAAACGACGACGTTTCCGATGATGATTCCGAATTCATTCTGGCTTCCTCCCTAGGCCTCAATCAGATTCGGACTCGCTCCAGTCCTTCGCCTCTTCGGTTCACCTCTCTGGCCGGTGAGCCTCCGAACCTTGGGAATGATGCCAAGAAGAATAAGGATGGAGCCGAAGCTCGCCCGAAAAGGACGAGTCCTCTGTGCCGGGCAACCTCCATGGAGCATAGTCAAGGTAAAAAGATATCATGGATTCAACCAAAATCTTTTAGAGTGCCATCACCACTTAATCCAGGATTGGAGGCTCATCATGCAATTCTTGCCAAAGAAATTCAATCTCCTCGTTTTCAAGCTATATTGCGAGTCACAAGTGGGCGTAGGAAAAGAACCTCAGATATTAAGAGCTTCTCTCATGAACTCAACTCTAAAGGAGTGCGGGCTTTTCCATTCTGGAAGTCTCGTGCAGTTGGCCATATGGAGGAGATTATGGTTGTGATCAGGGCAAAATTTGACAGATTAAAGGAAGAAGTTAATTCTGATTTAGGCATATTTGCTGGAGATTTGGTGGGCATACTTGAAAAAACTGCAGAAACTAAACTTGAATGGAAAGAGGGTTTAGAGGACTTGTTAATTGTAGCCCGGCACTGTGCAAAGATGCCACCAAATGAATTTTGGTTGAAGTGTGAAGGCATTGTTCAGAATTTAGATGATCGGCGTCAGGAACTGCCAATGGGCACTCTCAAGCAAGCCCACACTCGCCTTCTTTTTATCCTTACTCGATGCACTCGCCTTGTGCAGTTCCATAAAGAGAGTGGTTATGAAGAAGATCACATTCTGGGTCTTCATCAACTCAGTGATCTTGGAATCTATTCGGAGCATATACTTGGGGCCATGCAGCAAGAAAGTGGTGGTCCTGTGGATGTGAATGAGAAGCAGTCAAAGAAGTCACATGCCCAGGAACACAGCAGTTTGGCTCCAAAGCAAGATCAAGTAGATCATGATTTAGATAGTGGAGTGGAAGATCATGAAGTTGGCACTGCCAAAAGTGCTGATTCAATTACAAGCAGCTACAAAATGTCATCTTGGAAGAAATATCCATCTACAGCAGAGAAAAACCACAGGAAAGGCAATGAGGCTGTTGATATGACCTCCAAGGTTAAACTAGATCCCTTGCCAGTTAAAGATGAAAACAAAACTGAGGCAACCTCGAAAGTACACAGAGTTTCTTGGGGATGCTGGAGTGATCAACAACAAATAACATATGAAAATTCAATGATCTGTCGTATTTGTGAGGTTGAAATACCGACTGTGCATGTAGAGGATCACTCCAGAATATGTACAATCGCGGATAGATGCGACTTAAAAGGATTAACTGTAAATGAAAGGCTTGAAAGGGTTGCAGAGACTCTTGAAAGGATACTGGAATGTTGGACACCAAAAAGCACTGACACTTCAGGAGGAACTGATAATGAGTTTGTCATGGATGATCTTAATGTTTTGCCTGAAATGTCATGTGATACTCGCTCTTTTCTGACAACTGATCAAGGTACCAGAGCTTCATCATCTGGAAGCTTAACACCACGATCACCATTATTAACACCACGTACCAACCAGATTGAATTGCTTTTGAGTGGACGAAGAGCAATCTCAGAGCATGAAAATTTTCAGCAGATAAGCAAGCTACTGGATATTGCTCGTTCAGTTGTCACTGTTAATTCAAATGATTATAGTGCTTTGGAGTATATGCTTGATCGTCTAGAAGACCTAAAATATGCAATCCAGTATAGAAAAGTGGATGCCCTTATTGTTCAGACTTTTGGGAGGCGTATAGAAAAACTACTACAGGAGAAATATGTTCATCTTTGTGGACAGATAGAAGATGAAAAGATAGATTCATCTAATACCATGGCTGATGAAGACAGTCCAGTGGAAGATGATGCTGTTCGCAGTTTGCGCGCTAGCCCCATCAATCCATCTTGTAAGGATCGAACATCTATAGAAGATTTCGAAATATTGAAACCAATCAGTAGAGGAGCATTTGGACGAGTGTTCCTTGCCAGAAAAAGAGCAACTGGTGACTTGTTTGCAATAAAGGTTTTAAAAAAAGCTGATATGATTCGTAAAAATGCAGTTGAAAGCATTTTGGCAGAACGTAACATCCTAATATCAGCCCGCAATCCTTTTGTGGTTCGATTTTTCTACTCCTTCACATGCAGGGAAAACCTTTATCTGGTGATGGAATACTTAAATGGAGGAGATCTTTACTCTTTGTTGAAAAATCTTGGCTGCTTAGATGAAGACATGGCACGTGCGTATATTGCGGAAGTTGTTCTTGCTTTGGAGTATTTGCATTCCTTAAACGTGATTCATAGAGATTTGAAGCCCGACAACTTATTGATTGGTCATGATGGCCACATCAAGTTGACAGATTTTGGGCTTTCTAAGGTTGGTCTTATCAACAGCACCGAGGACTTATCAGTTGCTGGAACCCCTGATTATTTGGCACCTGAGATACTTCTTGGCATGGGACATGGCACAACGGCAGATTGGTGGTCTGTTGGGGTTATTCTTTTTGAGCTGCTTGTAGGTATTCCACCATTCAATGCAGCAAATCCACAGAAAATTTTCGACAATATTATGAATAGAGATATACCCTGGCCGAAAGTACCTGAGGAAATGAGCTTTGAAGCACATGATTTAATTGAAAAATTGCTGATTGAAAATCCATTTCAAAGGCTCGGAGCTACAGGGGCTAGTGAGGTGAAGAAACATGTGTTCTTCAAAGGCATTAATTGGGACACATTTGCAAGGCAGAAGGCTATGTTCATACCATCGGCAGAAAGTGCATATGACACAAGTTATTTCATGAGCCGATACATATGGAATCCTGAGGATGAACATGTCCATGGAGAAAGTGACTGTGAAGACACGACTGAAACATGCAGTGGTACATGCAGCAGCGGTTCATTCAGCAATCAGGGGGATGAGTGTGGTAATTTGGCAGACTTTAGTGCTCCAAACCTTGCTGTCAATTACTCATTTAGTAATTTCTCTTTCAAGAACTTGTCTCAACTGGCTTCCATCAATTACGATTTGCTTGTGAAGACTTTTAAGGATTCACCAGAAACGTCCAGATCGTCCAATCCATGA 3300 42.88 MHDPPPPAVDSSPTAAPSASLKAKLRKIPPIPVRRNPRDDSVDDKEEEGDGESENDDVSDDDSEFILASSLGLNQIRTRSSPSPLRFTSLAGEPPNLGNDAKKNKDGAEARPKRTSPLCRATSMEHSQGKKISWIQPKSFRVPSPLNPGLEAHHAILAKEIQSPRFQAILRVTSGRRKRTSDIKSFSHELNSKGVRAFPFWKSRAVGHMEEIMVVIRAKFDRLKEEVNSDLGIFAGDLVGILEKTAETKLEWKEGLEDLLIVARHCAKMPPNEFWLKCEGIVQNLDDRRQELPMGTLKQAHTRLLFILTRCTRLVQFHKESGYEEDHILGLHQLSDLGIYSEHILGAMQQESGGPVDVNEKQSKKSHAQEHSSLAPKQDQVDHDLDSGVEDHEVGTAKSADSITSSYKMSSWKKYPSTAEKNHRKGNEAVDMTSKVKLDPLPVKDENKTEATSKVHRVSWGCWSDQQQITYENSMICRICEVEIPTVHVEDHSRICTIADRCDLKGLTVNERLERVAETLERILECWTPKSTDTSGGTDNEFVMDDLNVLPEMSCDTRSFLTTDQGTRASSSGSLTPRSPLLTPRTNQIELLLSGRRAISEHENFQQISKLLDIARSVVTVNSNDYSALEYMLDRLEDLKYAIQYRKVDALIVQTFGRRIEKLLQEKYVHLCGQIEDEKIDSSNTMADEDSPVEDDAVRSLRASPINPSCKDRTSIEDFEILKPISRGAFGRVFLARKRATGDLFAIKVLKKADMIRKNAVESILAERNILISARNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLKNLGCLDEDMARAYIAEVVLALEYLHSLNVIHRDLKPDNLLIGHDGHIKLTDFGLSKVGLINSTEDLSVAGTPDYLAPEILLGMGHGTTADWWSVGVILFELLVGIPPFNAANPQKIFDNIMNRDIPWPKVPEEMSFEAHDLIEKLLIENPFQRLGATGASEVKKHVFFKGINWDTFARQKAMFIPSAESAYDTSYFMSRYIWNPEDEHVHGESDCEDTTETCSGTCSSGSFSNQGDECGNLADFSAPNLAVNYSFSNFSFKNLSQLASINYDLLVKTFKDSPETSRSSNP* 1100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 13169032 13189943 - Vvi16g459 Vvi16g459 778108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g459 1099 CDD STKc_MAST_like 725 982 - -
Vvi16g459 1099 PANTHER SERINE/THREONINE-PROTEIN KINASE 20 877 - -
Vvi16g459 1099 PANTHER SERINE/THREONINE-PROTEIN KINASE 876 1098 - -
Vvi16g459 1099 PANTHER SERINE/THREONINE PROTEIN KINASE IRE-RELATED 20 877 - -
Vvi16g459 1099 PANTHER SERINE/THREONINE PROTEIN KINASE IRE-RELATED 876 1098 - -
Vvi16g459 1099 MobiDBLite consensus disorder prediction 358 385 - -
Vvi16g459 1099 SMART serkin_6 719 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g459 1099 ProSiteProfiles AGC-kinase C-terminal domain profile. 978 1079 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi16g459 1099 Gene3D Transferase(Phosphotransferase) domain 1 803 995 - -
Vvi16g459 1099 SUPERFAMILY Protein kinase-like (PK-like) 709 1011 IPR011009 -
Vvi16g459 1099 MobiDBLite consensus disorder prediction 68 87 - -
Vvi16g459 1099 MobiDBLite consensus disorder prediction 352 385 - -
Vvi16g459 1099 MobiDBLite consensus disorder prediction 43 63 - -
Vvi16g459 1099 MobiDBLite consensus disorder prediction 99 113 - -
Vvi16g459 1099 Gene3D Phosphorylase Kinase; domain 1 717 1005 - -
Vvi16g459 1099 MobiDBLite consensus disorder prediction 1 127 - -
Vvi16g459 1099 Pfam Protein kinase domain 720 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g459 1099 ProSiteProfiles Protein kinase domain profile. 719 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g459 1099 ProSitePatterns Serine/Threonine protein kinases active-site signature. 838 850 IPR008271 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76270 PF00069 Pkinase 1.30E-65 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g459 - - vvi:100252544 2093.16