Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g478 ATGATTGCAGTTCTTCTCAGGAACCTTGTGAACTTAGTCTCTGAAGGCTGGTCGTGGTGGTGGGATGGACTCACTGAAAACACCATTTTTCGAGTAGTGGCCGCCCTTTCGACTGCAGCAATTGCCATTTCTTGGTATGTCTGGCTCATCAAGAAAGCAAGTAGAGGCCTCCCACCCTTGCCACCCGGCCCAAGAGGCTTGCCGTTGCTGGGAAACCTTCTCTTCATTGAGCCTGATCTTCATCGGTACTTCTCCAAGTTGTCCCAACTCTATGGTCCCATTTTCAAGCTTCAGCTAGGCAGCAAGACTTGCATTGTGATAAGCTCGTCTTCCGTGGCCAAAGAAATTCTCAAAGATCACGATGTGATTTTTGCTAACCGTGATGTACCTATTTCTGCATTAGCCCTCACATATGGGGGGCAAGACATAGCCTGGAGTCATTATAGCCCCGAATGGCGTAAACTACGCAAAGTTTTTGTCCAAGAAATGATGAGCAGCGCAAGCCTTGATGCTTGTTCTGCACTTAGGAGAAGAGAGGTGCAAGAAATGGTGAGGGACGTGTATGGAAAGGTGGGGACACCAATTAATATGGGGGATCAAATGTTTCTAACTGTATTAAATGTTGTAACAAGCATGTTATGGGGTGGAACACTTCATGGTGAGGATAGGAGTCGAATTGGAATGGAGTTTAGACGAGTCATTGTGGAGACGGTTGGATTGATGGGAAAACCTAATATTTCTGATCTTTTTCCTGCTCTTGCATGGTTTGATCTCCAAGGAATTGAATCAAGGGCGAAAAAGCTTGTTTTGTGGTTTGATAGGATTTTCGAATCCCTGATTGCTCAGAGGACACAATTGGATGGAGCTGATGGAGGAGGCAAGAACAAGAGCAAGGAAAGCAAGGACTTCCTGCAGTTTATGTTGGAGCTGATGCATCAAGGAGATGATAAAACCTCGGTCTCCATCACCCAGCTCAAGGCTTTGTTCATGGACATAGTCGTTGCTGCAACAGACACATCGTCCACCACAGTGGAGTGGGCAATGGCAGAACTGCTTCAACACCCACAGACAATGCAAAAAGCCCAAGAAGAATTGGAAAAAGTAGTAGGAAATAAAAACATTGTAGAAGAGTCTCATCTCTTCCAACTGCCCTACTTGGGTGCAGTCATAAAGGAAACCCTCCGTTTGCATCCCCCGCTGCCGCTCCTAGTCCCACACTCTCCTAGTACGTCTTGCATCATTTCCGGGTACACTATCCCAAAGGGCTCGCGGATACTCTTCAATGCATGGGCAATGCAAAGAAACCCCGAGGTCTGGGAGCATCCATTGGAGTTTATACCAGAGAGGTTCTTGGAAGATGCTGCTAGTGCCGACTACAAAGGCAACAATTTCAACTTTATGCCATTTGGGTCAGGGAGGAGGATTTGTGCTGGCTTACCTCTAGCTGAAAAGATGCTGCTATATGTTTTGGCTTCTCTTTTACATTCCTTTGATTGGAAATTACCTGATGGGAGGACAAGCGTTGATTTGGAGGAGAGGTTTGGAATCGTTTTGAAGAAAAGTGAGACACTTCTCGCCATTCCAACTGCAAGATTGTCCAATTAA 1605 46.17 MIAVLLRNLVNLVSEGWSWWWDGLTENTIFRVVAALSTAAIAISWYVWLIKKASRGLPPLPPGPRGLPLLGNLLFIEPDLHRYFSKLSQLYGPIFKLQLGSKTCIVISSSSVAKEILKDHDVIFANRDVPISALALTYGGQDIAWSHYSPEWRKLRKVFVQEMMSSASLDACSALRRREVQEMVRDVYGKVGTPINMGDQMFLTVLNVVTSMLWGGTLHGEDRSRIGMEFRRVIVETVGLMGKPNISDLFPALAWFDLQGIESRAKKLVLWFDRIFESLIAQRTQLDGADGGGKNKSKESKDFLQFMLELMHQGDDKTSVSITQLKALFMDIVVAATDTSSTTVEWAMAELLQHPQTMQKAQEELEKVVGNKNIVEESHLFQLPYLGAVIKETLRLHPPLPLLVPHSPSTSCIISGYTIPKGSRILFNAWAMQRNPEVWEHPLEFIPERFLEDAASADYKGNNFNFMPFGSGRRICAGLPLAEKMLLYVLASLLHSFDWKLPDGRTSVDLEERFGIVLKKSETLLAIPTARLSN* 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 13531880 13534050 - Vvi16g478 Vvi16g478 778127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g478 534 PANTHER OS08G0547900 PROTEIN 14 534 - -
Vvi16g478 534 SUPERFAMILY Cytochrome P450 61 531 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g478 534 Pfam Cytochrome P450 61 523 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g478 534 PRINTS P450 superfamily signature 335 352 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g478 534 PRINTS P450 superfamily signature 388 399 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g478 534 PRINTS P450 superfamily signature 467 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g478 534 PRINTS P450 superfamily signature 476 487 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g478 534 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 469 478 IPR017972 GO:0005506|GO:0016705
Vvi16g478 534 PRINTS E-class P450 group I signature 88 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g478 534 PRINTS E-class P450 group I signature 112 133 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g478 534 PRINTS E-class P450 group I signature 204 222 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g478 534 PRINTS E-class P450 group I signature 324 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g478 534 PRINTS E-class P450 group I signature 344 370 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g478 534 PRINTS E-class P450 group I signature 387 405 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g478 534 PRINTS E-class P450 group I signature 428 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g478 534 PRINTS E-class P450 group I signature 466 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g478 534 PRINTS E-class P450 group I signature 476 499 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g478 534 PANTHER OS08G0547900 PROTEIN 14 534 - -
Vvi16g478 534 Coils Coil 358 378 - -
Vvi16g478 534 Gene3D Cytochrome P450 46 527 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g478 - - vvi:100266899 1013.06