Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g515 ATGTCCATAAAGGCGTCGTTTAGCAACGTGGCTAACGCACTCCTCGACTGGGACGATGTCCATAATGCTGATTTCTGCTCGTGGAGAGGAGTTTTCTGTGACAATGTCAGCTTGTCAGTTGTTTCTCTGAACTTGTCAAATTTGAACTTGGGTGGGGAGATTTCATCAGCAGTTGGTGATTTGAAGAATCTGCAGTCCATAGACCTGCAGGGGAATAGATTAACTGGTCAACTCCCAGATGAGATTGGCAACTGTGTTTCTCTTTCAACTTTGGATTTGTCTGATAATCTGCTGTATGGGGACATACCCTTTTCAATTTCCAAGCTTAAGAAACTTGAGCTGTTGAATTTGAAGAACAATCAATTGACTGGGCCTATTCCATCAACATTGACTCAGATTCCCAACCTGAAAACTATTGACCTGGCTCGAAACCAGCTTACGGGTGAGATACCAAGGCTAATCTACTGGAATGAAGTATTGCAATACCTTGGGTTGCGGGGGAATTCATTGACTGGAACCTTGTCCCCTGACATGTGCCAATTAACAGGCCTGTGGTATTTTGATGTAAGAGGCAATAATCTGACTGGAACAATCCCTGATAGCATCGGTAACTGTACAAGCTTTGAAATCCTGGACATATCATATAACCAGATAACCGGGGAGATTCCATACAATATTGGGTTCCTACAAGTGGCTACACTGTCACTCCAAGGAAATAAGCTAACAGGAAAGATTCCAGAGGTGATTGGTCTAATGCAAGCCCTTGCTGTTTTGGATTTAAGTGAGAATAACCTTATTGGGCCCATACCACCAATACTTGGCAATTTAAGTTATACAGGAAAACTGTACCTCCATGGCAACAAGCTTACTGGACCAATTCCACCAGAACTTGGCAATATGTCAAAGCTTAGCTATTTGCAATTGAATGACAATCAATTGATTGGCAGTATTCCTGCTGAGCTTGGGAAGCTGGAGCAGTTGTTTGAACTGAATCTTGCTAACAATGATCTAGAAGGACCAATTCCACATAACATCAGTTCTTGCACAGCATTGAATCAATTCAATGTGCATGGTAATCATCTAAGTGGATCTATTCCTCCAGGCTTCCAGAATCTAGAGAGCTTGACCTATCTAAATCTTTCATCAAACAATTTCAAAGGCAGGATACCCCTTGAGCTGGGACGAATTGTCAATCTTGATACCTTGGATCTATCTAGCAATGGTTTCTTGGGAACTGTGCCTGCTTCTGTCGGTGATCTAGAGCATCTTCTCACACTGAATTTGAGTAGAAATAATCTTGATGGCCCAGTGCCAGCAGAATTTGGGAATCTCAGGAGCATACAGACAATTGATATGTCATTCAACAAGCTCTCTGGTGGTATCCCTAGGGAGTTAGGTCAGTTGCAGAATATTGTGTCATTGATCCTGAACAACAACAATTTGGATGGAGAAATCCCTGATCAGTTGACCAATTGTTTCAGCCTCACCATTTTGAACGTTTCCTACAACAATTTCTCAGGGGTTGTACCTCCAATTCGGAACTTCTCACGATTTTCGCCTGACAGCTTCATTGGAAACCCATTATTATGTGGCAACTGGTTGGGATCAATCTGTGGCCCATATGTTCCCAAATCCAGAGCAATTTTTTCAAGAACTGCAGTTGCATGTATAGCTTTGGGCTTCTTCACTCTATTATTGATGGTTGTTGTTGCAATTTACAAATCCAACCAACCAAAGCAACAGATAAATGGTTCTAACATTGTGCAAGGTCCTACCAAGCTTGTAATTCTGCACATGGATATGGCTATTCACACCTACGAGGATATCATGAGAATCACTGAAAATTTAAGCGAAAAGTACATTATAGGATATGGTGCTTCTAGCACAGTGTACAAGTGTGTATTGAAGAACTCCCGACCTATTGCAATTAAGCGAATCTATTCCCAATATGCACACAACTTACGAGAGTTTGAGACTGAACTTGAAACCATTGGCAGCATCAAACATAGAAACCTTGTTAGCTTGCATGGTTACTCACTATCACCCAAAGGAAACCTGCTCTTCTATGATTACATGGAAAATGGTTCTCTATGGGATCTTCTTCACGGACCATCAAAGAAGGTGAAACTTGATTGGGAAACCCGCCTGAAAATAGCAGTTGGAGCTGCTCAAGGACTTGCTTATCTTCATCATGATTGCAATCCTAGAATCATTCACAGGGATGTTAAGTCCTCAAATATCCTCCTGGATGAAAATTTTGATGCTCATCTCTCTGACTTTGGGATTGCAAAATGCATTCCTACTGCAAAAACTCATGCATCAACTTATGTTCTTGGTACAATTGGCTACATTGATCCAGAGTATGCCCGTACCTCGCGGCTCAATGAAAAATCTGATGTTTATAGTTTTGGCATTGTCCTTCTGGAGCTGCTGACAGGGAAGAAAGCTGTAGACAATGAATCAAATTTGCATCAACTGATATTGTCAAAGGCAGACGATAACACTGTAATGGAAGCAGTTGACCCAGAGGTTTCTGTTACATGCATGGACTTAGCTCACGTCAGGAAAACCTTCCAACTTGCTCTTCTGTGCACAAAGCGCCATCCATCCGAGAGGCCAACCATGCATGAAGTTGCCAGGCCTATTGATTATGCCCACTTTGTGATGGACAAAGGCCAGAAGCAGCAAAATGCCCAGCTACCGCCCCATGTCGAACCAGACAATAATACCTCCTCCAATGATGCCCAATGGTTTGTCAGGTTCCATGAGGTCATATCCAAGAACTCCCTATAA 2793 42.28 MSIKASFSNVANALLDWDDVHNADFCSWRGVFCDNVSLSVVSLNLSNLNLGGEISSAVGDLKNLQSIDLQGNRLTGQLPDEIGNCVSLSTLDLSDNLLYGDIPFSISKLKKLELLNLKNNQLTGPIPSTLTQIPNLKTIDLARNQLTGEIPRLIYWNEVLQYLGLRGNSLTGTLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSENNLIGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLNDNQLIGSIPAELGKLEQLFELNLANNDLEGPIPHNISSCTALNQFNVHGNHLSGSIPPGFQNLESLTYLNLSSNNFKGRIPLELGRIVNLDTLDLSSNGFLGTVPASVGDLEHLLTLNLSRNNLDGPVPAEFGNLRSIQTIDMSFNKLSGGIPRELGQLQNIVSLILNNNNLDGEIPDQLTNCFSLTILNVSYNNFSGVVPPIRNFSRFSPDSFIGNPLLCGNWLGSICGPYVPKSRAIFSRTAVACIALGFFTLLLMVVVAIYKSNQPKQQINGSNIVQGPTKLVILHMDMAIHTYEDIMRITENLSEKYIIGYGASSTVYKCVLKNSRPIAIKRIYSQYAHNLREFETELETIGSIKHRNLVSLHGYSLSPKGNLLFYDYMENGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILLDENFDAHLSDFGIAKCIPTAKTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNESNLHQLILSKADDNTVMEAVDPEVSVTCMDLAHVRKTFQLALLCTKRHPSERPTMHEVARPIDYAHFVMDKGQKQQNAQLPPHVEPDNNTSSNDAQWFVRFHEVISKNSL* 931
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 14344648 14350934 - Vvi16g515 Vvi16g515 778164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g515 930 ProSitePatterns Protein kinases ATP-binding region signature. 622 644 IPR017441 GO:0005524
Vvi16g515 930 CDD STKc_IRAK 622 880 - -
Vvi16g515 930 Gene3D Transferase(Phosphotransferase) domain 1 692 900 - -
Vvi16g515 930 Gene3D Ribonuclease Inhibitor 156 267 IPR032675 -
Vvi16g515 930 Pfam Leucine Rich Repeat 63 85 IPR001611 GO:0005515
Vvi16g515 930 MobiDBLite consensus disorder prediction 893 912 - -
Vvi16g515 930 SUPERFAMILY L domain-like 273 531 - -
Vvi16g515 930 SUPERFAMILY Protein kinase-like (PK-like) 596 880 IPR011009 -
Vvi16g515 930 Gene3D Ribonuclease Inhibitor 268 540 IPR032675 -
Vvi16g515 930 Gene3D Ribonuclease Inhibitor 1 155 IPR032675 -
Vvi16g515 930 ProSitePatterns Serine/Threonine protein kinases active-site signature. 737 749 IPR008271 GO:0004672|GO:0006468
Vvi16g515 930 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED 1 883 - -
Vvi16g515 930 SMART LRR_typ_2 61 85 IPR003591 -
Vvi16g515 930 SMART LRR_typ_2 109 132 IPR003591 -
Vvi16g515 930 SMART LRR_typ_2 420 443 IPR003591 -
Vvi16g515 930 SMART LRR_typ_2 133 157 IPR003591 -
Vvi16g515 930 SMART LRR_typ_2 300 324 IPR003591 -
Vvi16g515 930 SMART LRR_typ_2 252 276 IPR003591 -
Vvi16g515 930 SMART LRR_typ_2 372 396 IPR003591 -
Vvi16g515 930 SMART LRR_typ_2 181 205 IPR003591 -
Vvi16g515 930 SMART LRR_typ_2 468 492 IPR003591 -
Vvi16g515 930 Gene3D Phosphorylase Kinase; domain 1 580 691 - -
Vvi16g515 930 Pfam Leucine rich repeat N-terminal domain 2 34 IPR013210 -
Vvi16g515 930 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 883 - -
Vvi16g515 930 Pfam Leucine rich repeat 88 146 IPR001611 GO:0005515
Vvi16g515 930 Pfam Leucine rich repeat 398 457 IPR001611 GO:0005515
Vvi16g515 930 SUPERFAMILY L domain-like 10 289 - -
Vvi16g515 930 SMART serkin_6 616 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g515 930 Pfam Protein kinase domain 619 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g515 930 Pfam Leucine Rich repeat 204 221 IPR001611 GO:0005515
Vvi16g515 930 ProSiteProfiles Protein kinase domain profile. 616 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76272 PF00069 Pkinase 4.70E-43 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g515 K20718 - vvi:100256609 1808.11