Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi16g518	ATGTCATCATCTAATTCTCCATGTGCGGCGTGCAAGCTTCAAAGGCGGAAATGTACACAAGAGTGTATATACGCACCCTATTTCCCACCAGATCAGCCTCAAAAATTCGCTAACGTCCACAAGGTCTTCGGTGCAAGCAATGTTGCAAAGCTTCTCAACGAAATAAATGCTGCAAATCGAGAAGATGCCGTGAATTCCCTAGCTTATGAAGCGGAGGCTCGTCTTCACGATCCCGTCTATGGCTGTGTTGGTATGATTTCAATTCTTCAACAACAACTTAAGCATCTTCAGAATGACCTTTTGGCTGCCAAAAAGGAACTAGCTGCATATATTGGTCCGTCAGCGATGGCACATGTCGGGTATATGCCACAACAATACATGAGCGATCCTTCTTCATCGTCGGTCATTCCTTATAACATGTCGCCAATTTTGGGTCTTCCCCCTGGTGCTCCACATGGTGGGCAATTGATAATTCACTTCGCTTTTCTAAACTGTTCTGATCCTATGCATCTTATTTTGTACCGGCGGATTACTGTTGGATATTGGCAATTACCCTCTCTTCACTTTCACTGCGGCCAAGGTCCATTCATATCTGCCTTAACACACAAAGTAGGGAAGGACGCTATGATTATGGTGTTTGAAGCAGCCTATTTCTTTGGTGAAACATTGTGA	672	44.35	MSSSNSPCAACKLQRRKCTQECIYAPYFPPDQPQKFANVHKVFGASNVAKLLNEINAANREDAVNSLAYEAEARLHDPVYGCVGMISILQQQLKHLQNDLLAAKKELAAYIGPSAMAHVGYMPQQYMSDPSSSSVIPYNMSPILGLPPGAPHGGQLIIHFAFLNCSDPMHLILYRRITVGYWQLPSLHFHCGQGPFISALTHKVGKDAMIMVFEAAYFFGETL*	224

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
16	14419740	14420915	-	Vvi16g518	Vvi16g518	778167

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi16g518	223	ProSiteProfiles	LOB domain profile.	6	107	IPR004883	-
	Vvi16g518	223	Coils	Coil	86	106	-	-
	Vvi16g518	223	PANTHER	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	1	160	-	-
	Vvi16g518	223	PANTHER	LOB DOMAIN-CONTAINING PROTEIN 36-LIKE	1	160	-	-
	Vvi16g518	223	Pfam	Lateral organ boundaries (LOB) domain	7	103	IPR004883	-

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	14138	PF03195	LOB	2.40E-41	No_clan	Vvi	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi16g518	-		-	vvi:100242948	324.709