Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g534 ATGAGCGCCAGAGAGAGCGGAGGAGGGAATTCCAACTTCACCGTGGAAGGGAATCAGAATCTGGCGGAGGAGGAGGGGAGTAATCCCGCTCCGTCAGCGACGTCGTCCGGTGACGACACAGAGTCGTCGTTGTCCATCCTGACGGCGCCGTCGGAGGCGCCGCCTCCAGAGCCGGTTTTCGGAATGATGACGGTGTCGGGAAGAATGCAGGAAATGGAAGATGCGGTATCCGTGCAAACGAACCTTTGCCGGCCGGAGATCAACCGGGGGCTGCCGGTGCATTTCTTCGGCGTCTACGATGGTCATGGAGGATCTCATGTGGCGAACCTGTGCAGAGAGATGATGCACTTGATATTAGAGCAGGAGTTGATGAGCGTGGACAACACGCAGGAGGGTGCGCATGGTGGTGAACCAGGCGGCAAGGAGATTGAGAATAAAGAGGGGTGGACAAGAGCCCTGAAGAGGTGCTTTCAGAGAATGGACGAGGTGGTGCTAAACTCCTGCTTGTGCAGAAACGATTGGCGGCAGTGCAGCTGCCGCGGCATCATGGAGGTGGAAATGACGGGGACCACGGCGGTGGTGGCTATTATCACCACTGACCACATTGTTGTTGCCAACTGCGGGGATTCACGCGGCGTCCTCTGCCGTGAAGGCACCGCCATCCCTCTGAGCTTTGATCACAAGCCGGACAGATCAGATGAACTTGCTAGGATAAAATCCTCTGGAGGCCGAGTTATCATTATGAATGGAGCAAGAGTTGAGGGAATGCTTGGAATGTCACGAGCAATTGGAGACAGGTATCTAAAACCATTTATAACATCAGAGCCTGAGATAACATTCACAAAAAGAGAGGCAGGAGATGAGTGTTTAATTCTGGCAAGTGATGGCTTATGGGATGTTTTGCCTAATGAGGTGGCTTGTGGGGTAGCTTCTGGGTGCCTTCGACGAGAGTCTCATGCCACTACTGAAAACCTTAAGTCGGAGGATTGGAAAGAAAGTGAAAGCACTGGACAATTTTACCCAAATCATACTACACAGGCTGCTGCGCTTCTCACCCGCCTTGCTTTGGGACGGCAAAGCCTTGATAACATTAGTGTTGTCGTTGTTGACTTACAAAGGAGTTGA 1125 52.8 MSARESGGGNSNFTVEGNQNLAEEEGSNPAPSATSSGDDTESSLSILTAPSEAPPPEPVFGMMTVSGRMQEMEDAVSVQTNLCRPEINRGLPVHFFGVYDGHGGSHVANLCREMMHLILEQELMSVDNTQEGAHGGEPGGKEIENKEGWTRALKRCFQRMDEVVLNSCLCRNDWRQCSCRGIMEVEMTGTTAVVAIITTDHIVVANCGDSRGVLCREGTAIPLSFDHKPDRSDELARIKSSGGRVIIMNGARVEGMLGMSRAIGDRYLKPFITSEPEITFTKREAGDECLILASDGLWDVLPNEVACGVASGCLRRESHATTENLKSEDWKESESTGQFYPNHTTQAAALLTRLALGRQSLDNISVVVVDLQRS* 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 14705028 14709730 + Vvi16g534 Vvi16g534 778183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g534 374 SUPERFAMILY PP2C-like 58 372 IPR036457 -
Vvi16g534 374 ProSitePatterns PPM-type phosphatase domain signature. 95 103 IPR000222 GO:0043169
Vvi16g534 374 SMART PP2C_4 49 369 IPR001932 -
Vvi16g534 374 ProSiteProfiles PPM-type phosphatase domain profile. 59 371 IPR001932 -
Vvi16g534 374 CDD PP2Cc 59 371 IPR001932 -
Vvi16g534 374 MobiDBLite consensus disorder prediction 1 49 - -
Vvi16g534 374 PANTHER PROTEIN PHOSPHATASE 2C 75-RELATED 29 373 - -
Vvi16g534 374 PANTHER ALPHABET, ISOFORM E-RELATED 29 373 - -
Vvi16g534 374 MobiDBLite consensus disorder prediction 1 60 - -
Vvi16g534 374 Pfam Protein phosphatase 2C 60 318 IPR001932 -
Vvi16g534 374 Gene3D - 56 374 IPR036457 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g534 K14497 - vvi:100242943 741.11