Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g545 ATGGGGAGAGGGAGAGTGGTGTTGCAGAGGATAGAGAACAAGATCAACCGCCAAGTCACCTTCTCCAAACGGAGAAATGGACTGCTGAAGAAAGCCTACGAGCTTTCTGTGCTCTGCGATGCTGAGGTCTGTCTCATCATCTTCTCTAGCCGTGGGAAGCTTTTCGAGTTCGGAAGCTCTGGCATGACCAAAACCATTGAGCGATACCGAAGATGTTGTTACGCCTCAAGAGATAACAATGACGCTGAGCATGATAGACAGATTGGGCACGAAGAGTATTCGAAGTTAAAGGCCAAATATGAATCTCTTATGGACTCACAGAGGCATTTGCTTGGAGAGGATCTTGGGCTGCTTAGTATCAAAGAGTTGCAAAATCTTGAGAAAATGCTCGAGGGAACTCTCTCTCAAGCAAGGCAACGAAAGGCACAAATGATGTTAAAACAAATGGACGAACTGAAAAAAAAGGAGCATGATCTTGAAGAGATGAATAAACAGCTCACATCGAAGCTTGAGGAACTTGAAGAATGTGTTCGAGTAATTGAAGCTTCATGGGATTCTGGCACAGTAGCTGGCAACGACAGCCTCAACATGCACATCTCTCAACCCAACCAAATTCAACCTCAACCTCAACCCCAACCCCAACCCAGCCTACCAATGGGGTTCCACGAATTTGTTCCACCGGAAGGAGCAGCTATAGCAAGGAATGTAGGCAATGCCCGGAATGGCCTCGCCCAAGGATGGCTTGTTTGA 750 46.93 MGRGRVVLQRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVCLIIFSSRGKLFEFGSSGMTKTIERYRRCCYASRDNNDAEHDRQIGHEEYSKLKAKYESLMDSQRHLLGEDLGLLSIKELQNLEKMLEGTLSQARQRKAQMMLKQMDELKKKEHDLEEMNKQLTSKLEELEECVRVIEASWDSGTVAGNDSLNMHISQPNQIQPQPQPQPQPSLPMGFHEFVPPEGAAIARNVGNARNGLAQGWLV* 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 14940189 14955349 + Vvi16g545 Vvi16g545 778194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g545 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi16g545 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi16g545 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi16g545 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi16g545 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi16g545 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 234 - -
Vvi16g545 249 Coils Coil 120 183 - -
Vvi16g545 249 MobiDBLite consensus disorder prediction 196 216 - -
Vvi16g545 249 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Vvi16g545 249 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 234 - -
Vvi16g545 249 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Vvi16g545 249 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vvi16g545 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi16g545 249 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi16g545 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi16g545 249 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g422 Vvi16g545 ECH
Vvi15g502 Vvi16g545 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14142 PF01486 K-box 2.10E-24 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g545 K09264 - vvi:100256085 468.774