Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g549 ATGAGGCGAATTGAGAATGCCACGAGCAGGCAAGTGACCTTCTCGAAACGCCGAAACGGGCTGCTGAAGAAGGCGTATGAGCTATCGGTTCTCTGTGATGCTGAAGTTGCTGTGATCATTTTCTCACAGAAAGGAAGGCTCTACGAGTTTTCCAGTTCCAACATGCAAAGTGCGATAGAACGATACCGTGAACATGCAAAACAAGTTGAAACCAACAATCCAGAATTGGAGCAATATATGCAGAATTTGAAGCAGGATGCAGAAAGCATGGCAAAGAAGATAGAGCTCCTTGAAGTTTCTCAACGGAAGCTTTTGGGACAAGGCTTGAGCTCATGTTCTCTGGACGAAATCCTAGAGATTGACAGCCAACTGGAGAAGAGCTTAAAGAGCATCAGGGCAAGAAAGGCTCAGATATTCCAGGAGCAGATTGAGGAGCTAAAAGAAAGGGAGAAACAACTGCTAGAAGAAAATGCAAGGTTAAGTCAAAAGGACACAAGGCAGTGGCAACTCTCAGCACAACCAAGTGAAGGTGTAACCTACAGCCAAAGCAGTCCAAGTTCTGAAGTGGAGACCGAGTTGTTCATCGGCCTGCCAGAAATGCGCTGCTCATGA 612 46.24 MRRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSNMQSAIERYREHAKQVETNNPELEQYMQNLKQDAESMAKKIELLEVSQRKLLGQGLSSCSLDEILEIDSQLEKSLKSIRARKAQIFQEQIEELKEREKQLLEENARLSQKDTRQWQLSAQPSEGVTYSQSSPSSEVETELFIGLPEMRCS* 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 14995535 15032836 - Vvi16g549 Vvi16g549 778198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g549 203 ProSiteProfiles K-box domain profile. 80 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi16g549 203 CDD MADS_MEF2_like 1 65 IPR033896 GO:0000977|GO:0045944
Vvi16g549 203 PANTHER MADS BOX PROTEIN 1 199 - -
Vvi16g549 203 PANTHER MADS-BOX PROTEIN SOC1 1 199 - -
Vvi16g549 203 Coils Coil 66 100 - -
Vvi16g549 203 Gene3D - 7 90 IPR036879 GO:0003677|GO:0046983
Vvi16g549 203 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
Vvi16g549 203 Pfam K-box region 80 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi16g549 203 SUPERFAMILY SRF-like 1 68 IPR036879 GO:0003677|GO:0046983
Vvi16g549 203 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 50 IPR002100 GO:0003677|GO:0046983
Vvi16g549 203 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Vvi16g549 203 Coils Coil 136 163 - -
Vvi16g549 203 MobiDBLite consensus disorder prediction 163 190 - -
Vvi16g549 203 MobiDBLite consensus disorder prediction 162 191 - -
Vvi16g549 203 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677|GO:0046983
Vvi16g549 203 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi15g504 Vvi16g549 ECH
Vvi2g422 Vvi16g549 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14143 PF01486 K-box 5.30E-23 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g549 - - vvi:100268115 375.555