Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g55 ATGAGCAAGGGCACCGATAGCTATGGTGTCACCACTGGGTTTGGTGCCACTTCACATAGGAGAACCAAACAAGGTGGTGCCCTTCAGAAGGAGCTCATCAGGTTCTTGAACGCTGGGATATTTGGGAACGGAACAGAGTCATGCCACACACTGCCTTACTCAGCAACAAGAGCCGCCATGCTCGTAAGGATCAACACCCTCCTCCAAGGCTACTCCGGCATCAGATTTGAGATTCTGGAAGCAATCACCAAGCTCCTCAATCACAACATCACTCCATGCTTGCCTCTGCGTGGCACCGTCACTGCCTCCGGAGACCTGGTTCCTCTCTCCTACATTGCTGGTCTTCTCACCGGCAGGCCTAATTCCAAAGCTGTTGGACCTTCCGGTGAAGTTGTCAATGCCGAAGAGGCCTTTAAAATGGCTGGGATCGAGTCGGGATTTTTTGAGTTGCAACCTAAGGAAGGCCTGGCTCTTGTTAATGGCACTGCAGTTGGCTCTGGCTTGGCCTCTATGGTGCTTTTTGAGACCAATGTGCTGGCAGTTTTGTCTGAACCGAAGCAAGATCGATATGCTCTCAGGACTTCACCTCAATGGCTTGGCCCACACATTGAAGTCATCCGAGCATCAACTAAATCCATCGAACGGGAGATCAACTCTGTGAATGATAACCCCTTGATCGATGTTTCCAGGAACAAGGCTCTACATGGTGGCAACTTCCAGGGGACCCCAATTGGAGTCTCCATGGACAACACCCGCTTGGCCATTGCAGCCATTGGGAAGCTTATGTTTGCCCAGTTCTCAGAGCTTGTCAATGACTTCTACAACAATGGACTGCCATCAAATCTCTCTGGAAGCCGGAACCCGAGTCTGGATTATGGTTTCAAGGGAGCAGAAATTGCCATGGCTTCCTACTGTTCAGAGCTCCAGTTCTTGGCCAATCCTGTTACCAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAACTCCTTGGGCTTAATCTCCTCCAGGAAAACAGCTGAAGCGGTGGATATCTTGAAGCTCATGTCTACCACATACCTAGTGGCACTCTGCCAGGCCATTGATTTGAGGCATTTGGAGGAGAATTTGAAGAGCACTGTGAAGAAGACTGTAAGCCACGTAGCTAAGAAGACTCTAACCACTGGAGCCAATGGAGGACTCCATCCATCGAGATTCTGCGAGAAGGACTTGCTAAAAGTGGTGGATAGGGAACATGTATTCGCCTACATCGATGACCCCTGCAGCGCCACATATCCACTGATGCAGAAGTTAAGGCAAGAGGAGTTGAAGGCCGTTTTGCCCAAAGAGGTTGAGAGCGCAAGAGGTGCGGTGGAGAGTGGAAACCCATCGACTCCGAACCGAATCAAGGAGTGCAGGTCATACCCTTTGTACAAGTTTGTGAGGGAGGAGCTGGGAACAGGGCTGCTGACTGGTGAAAAGGTGAGGTCACCAGGGGAGGACTTTGACAAGGTGTTTACTGCAATTATGGCATCTTCTGCAAATCTTCCTCCCTCACCTCCTTGTCCACATACGACAAGACATATTCAGATAAGGAGGAAGATGAACCCGGGTTGCTGTTGTCTTCTTGTTGTTTGCTTCGAATTTGTTGCTTTAACTGCTGTCTGGCTCTTATGTGTGGAAGCATAA 1671 49.85 MSKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESCHTLPYSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTVTASGDLVPLSYIAGLLTGRPNSKAVGPSGEVVNAEEAFKMAGIESGFFELQPKEGLALVNGTAVGSGLASMVLFETNVLAVLSEPKQDRYALRTSPQWLGPHIEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGSRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSTTYLVALCQAIDLRHLEENLKSTVKKTVSHVAKKTLTTGANGGLHPSRFCEKDLLKVVDREHVFAYIDDPCSATYPLMQKLRQEELKAVLPKEVESARGAVESGNPSTPNRIKECRSYPLYKFVREELGTGLLTGEKVRSPGEDFDKVFTAIMASSANLPPSPPCPHTTRHIQIRRKMNPGCCCLLVVCFEFVALTAVWLLCVEA* 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 595689 601170 - Vvi16g55 Vvi16g55 777704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g55 556 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 98 114 IPR022313 GO:0016841
Vvi16g55 556 CDD PAL-HAL 1 365 IPR001106 -
Vvi16g55 556 Pfam Aromatic amino acid lyase 185 377 IPR001106 -
Vvi16g55 556 Pfam Aromatic amino acid lyase 2 183 IPR001106 -
Vvi16g55 556 Gene3D Fumarase/aspartase (Central domain) 430 514 - -
Vvi16g55 556 Gene3D Fumarase/aspartase (Central domain) 165 429 - -
Vvi16g55 556 Gene3D - 1 162 IPR024083 -
Vvi16g55 556 MobiDBLite consensus disorder prediction 1 22 - -
Vvi16g55 556 SUPERFAMILY L-aspartase-like 2 506 IPR008948 GO:0003824
Vvi16g55 556 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 1 184 - -
Vvi16g55 556 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 435 505 - -
Vvi16g55 556 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 182 434 - -
Vvi16g55 556 PANTHER HISTIDINE AMMONIA-LYASE 435 505 IPR001106 -
Vvi16g55 556 PANTHER HISTIDINE AMMONIA-LYASE 1 184 IPR001106 -
Vvi16g55 556 PANTHER HISTIDINE AMMONIA-LYASE 182 434 IPR001106 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g55 K10775 - pop:18100180 823.542