Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g56 ATGAGCAAAGGCACCGACAGCTATGGTGTCACCACTGGGTTTGGTGCCACTTCACATAGGAGAACCAAACAAGGTGGTGCCCTTCAGAAGGAGCTCATCAGGTTCTTGAATGCTGGGATATTTGGGAACGGAACAGAGTCATGCCACACACTGCCTCACTCAGCAACAAGAGCCGCCATGCTCGTGAGGATCAACACCCTCCTCCAAGGCTACTCCGGCATCAGATTTGAGATTCTGGAAGCAATCACCAAGCTCCTCAATCACAACATCACTCCATGCTTGCCTCTGCGTGGCACCGTCACTGCCTCCGGAGACCTGGTTCCTCTCTCCTACATCGCTGGTCTTCTCACCGGCAGGCCTAATTCCAAAGCTGTTGGACCTTCCGGTGAAGTTGTCAATGCCGAAGAGGCCTTTAAAATGGCTGGGATCGAGTCGGGATTTTTTGAGTTGCAGCCTAAGGAAGGCCTGGCTCTTGTTAATGGCACTGCAGTTGGCTCTGGCTTGGCCTCTATGGTGCTTTTTGAGACCAATGTGCTGGCAGTTTTGTCTGAACCGAAGCAAGATCGATATGCTCTCAGGACTTCACCTCAATGGCTTGGCCCACACATTGAAGTCATCCGAGCATCAACTAAATCCATCGAACGGGAGATCAACTCTGTGAATGATAACCCCTTGATCGATGTTTCCAGGAACAAGGCTCTACATGGTGGCAACTTCCAGGGGACCCCAATTGGAGTCTCCATGGACAACACCCGCTTGGCCATTGCAGCCATTGGGAAGCTTATGTTTGCCCAGTTCTCAGAGCTTGTCAATGACTTCTACAACAATGGACTGCCATCAAATCTCTCTGGAAGCCGGAACCCGAGTCTGGACTATGGTTTCAAGGGAGCAGAAATTGCCATGGCTTCCTACTGTTCAGAGCTCCAGTTCTTGGCCAATCCTCTCATGTCTACCACATACATAGTAGCACTCTGCCAGGCCATTGATTTGAGGCATTTGGAGGAGAATTTGAAGAGCACTGTGAAGAAGACTGTAAGCCACGTAGCTAAGAAGACTCTAACCACTGGAGCCAATGGAGGACTCCATCCATCGAGATTCTGCGAGAAGGACTTGCTAAAAGTGGTGGATAGGGAACATGTATTCGCCTACATCGATGACCCCTGCAGCGCCACATATCCACTGATGCAGAAGTTAAGGCAATGGAAACCCATCGATTCCGAACCGAATCAAGGAGTGTTTACTGCAATGTGTGAGGGGGAGATCATCGACCCTCTTCTGGGTTGTCTCAGTGCTTGGAACGGTGCACCTCTCCCAATCTGCTAG 1323 50.64 MSKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTVTASGDLVPLSYIAGLLTGRPNSKAVGPSGEVVNAEEAFKMAGIESGFFELQPKEGLALVNGTAVGSGLASMVLFETNVLAVLSEPKQDRYALRTSPQWLGPHIEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGSRNPSLDYGFKGAEIAMASYCSELQFLANPLMSTTYIVALCQAIDLRHLEENLKSTVKKTVSHVAKKTLTTGANGGLHPSRFCEKDLLKVVDREHVFAYIDDPCSATYPLMQKLRQWKPIDSEPNQGVFTAMCEGEIIDPLLGCLSAWNGAPLPIC* 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 607610 610206 - Vvi16g56 Vvi16g56 777705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g56 440 Gene3D - 334 402 IPR023144 -
Vvi16g56 440 Gene3D Fumarase/aspartase (Central domain) 183 315 - -
Vvi16g56 440 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 98 114 IPR022313 GO:0016841
Vvi16g56 440 SUPERFAMILY L-aspartase-like 2 440 IPR008948 GO:0003824
Vvi16g56 440 CDD PAL-HAL 1 331 IPR001106 -
Vvi16g56 440 PANTHER HISTIDINE AMMONIA-LYASE 1 184 IPR001106 -
Vvi16g56 440 PANTHER HISTIDINE AMMONIA-LYASE 410 440 IPR001106 -
Vvi16g56 440 PANTHER HISTIDINE AMMONIA-LYASE 315 400 IPR001106 -
Vvi16g56 440 PANTHER HISTIDINE AMMONIA-LYASE 182 315 IPR001106 -
Vvi16g56 440 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 410 440 - -
Vvi16g56 440 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 315 400 - -
Vvi16g56 440 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 182 315 - -
Vvi16g56 440 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 1 184 - -
Vvi16g56 440 Gene3D - 1 162 IPR024083 -
Vvi16g56 440 Pfam Aromatic amino acid lyase 185 317 IPR001106 -
Vvi16g56 440 Pfam Aromatic amino acid lyase 2 183 IPR001106 -
Vvi16g56 440 MobiDBLite consensus disorder prediction 1 22 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g56 K10775 - csin:114262497 592.808