Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g57 ATGAGCAAGGGCACCGATAGCTATGGTGTCACCACTGGGTTTGGTGCCACTTCACATAGGAGAACCAAACAAGGTGGTGCCCTTCAGAAGGAGCTCATCAGGTTCTTGAATGCTGGGATATTTGGGAACGGAAGAGAGTCATGCCACACACTGCCTCACTCAGCAACAAGAGCCGCCATGCTCGTGAGGATCAACACCCTCCTCCAAGGCTACTCCGGCATCAGATTTGAGATTCTGGAAGCAATCACCAAGCTCCTCAATCACAACATCACTCCATGCTTGCCTCTGCGTGGCACCGTCACTGCCTCCGGAGACCTGGTTCCTCTCTCCTACATCGCTGGTCTTCTCATTGGCAGGCCTAATTCCAAAGCTGTCGGACCTTCCGGTGATGTTGTCAATGCCGAAGAGGCCTTTAAAATGGCTGGGATCGAGTCGGGATTTTTTGAGTTGCAGCCTAAGGAAGGCCTGGCTCTTGTTAATGGCACTGCAGTTGGCTCTGGCTTGGCCTCTATGGTGCTTTTTGAGACCAATGTGCTGGCAGTTTTGTCTGAACCGAAGCAAGATCGATATGCTCTCAGGACTTCACCTCAATGGCTTGGCCCACACATTGAAGTCATCCGAGCATCAACTAAATCCATCGAACGGGAGATCAACTCTGTGAATGATAACCCCTTGATCGATGTTTCCAGGAACAAGGCTCTACATGGTGGCAACTTCCAGGGGACCCCAATTGGAGTCTCCATGGACAACACTCGCTTGGCCATTGCAGCCATTGGGAAGCTTATGTTTGCCCAGTTCTCAGAGCTTGTCAATGACTTCTACAACAATGGACTGCCATCAAATCTCTCTGGAAGCCGGAACCCGAGTCTGGATTATGGTTTCAAGGGAGCAGAAATTGCCATGGCTTCCTACTGTTCAGAGCTCCAGTTCTTGGCCAATCCTGTTACCAACCATGTCCAAAGCGCTGAGCAACACAACCAAGATGTGAACTCCTTGGGCTTAATCTCCTCCAGGAAAACAGCTGAAGCGGTGGATATCTTGAAGCTCATGTCTACCACATACCTAGTGGCACTCTGCCAGGCCATTGATTTGAGGCATTTGGAGGAGAATTTGAAGAGCACTGTGAAGAAGACTGTAAGCCACGTAGCTAAGAAGACTCTAACCACTGGAGCCAATGGAGGACTCCATCCATCGAGATTCTGCGAGAAGGACTTGCTAAAAGTGGTGGATAGGGAACATGTATTTGCCTACATCGATGACCCCTGCAGCGCCACATATCCACTGATGCAGAAGTTAAGGCAATGGAAACCCATCAATTCCGAACCGAATCAAGGAGTGTTTACTGCAATGTGTGAGGGGAAGATCATCGACCCTCTTCTGGATTGTCTCAGTGCTTGGAACGGTGCACCTCTCCCAATCTGCTAG 1425 50.11 MSKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGRESCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTVTASGDLVPLSYIAGLLIGRPNSKAVGPSGDVVNAEEAFKMAGIESGFFELQPKEGLALVNGTAVGSGLASMVLFETNVLAVLSEPKQDRYALRTSPQWLGPHIEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGSRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSTTYLVALCQAIDLRHLEENLKSTVKKTVSHVAKKTLTTGANGGLHPSRFCEKDLLKVVDREHVFAYIDDPCSATYPLMQKLRQWKPINSEPNQGVFTAMCEGKIIDPLLDCLSAWNGAPLPIC* 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 613591 616135 - Vvi16g57 Vvi16g57 777706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g57 474 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 98 114 IPR022313 GO:0016841
Vvi16g57 474 CDD PAL-HAL 1 365 IPR001106 -
Vvi16g57 474 MobiDBLite consensus disorder prediction 1 23 - -
Vvi16g57 474 Gene3D Fumarase/aspartase (Central domain) 165 474 - -
Vvi16g57 474 SUPERFAMILY L-aspartase-like 2 474 IPR008948 GO:0003824
Vvi16g57 474 PANTHER HISTIDINE AMMONIA-LYASE 1 184 IPR001106 -
Vvi16g57 474 PANTHER HISTIDINE AMMONIA-LYASE 182 434 IPR001106 -
Vvi16g57 474 PANTHER HISTIDINE AMMONIA-LYASE 444 474 IPR001106 -
Vvi16g57 474 Pfam Aromatic amino acid lyase 2 183 IPR001106 -
Vvi16g57 474 Pfam Aromatic amino acid lyase 185 377 IPR001106 -
Vvi16g57 474 Gene3D - 1 162 IPR024083 -
Vvi16g57 474 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 444 474 - -
Vvi16g57 474 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 1 184 - -
Vvi16g57 474 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 182 434 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g57 K10775 - pop:18100180 719.153