Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g58 ATGAGCAAAGGCACCGACAGCTATGGTGTCACCACTGGGTTTGGTGCCACTTCACATAGGAGAACCAAACAAGGTGGTGCCCTTCAGAAGGAGCTCATCAGGTTCTTGAATGCTGGGATATTTGGGAACGGAACAGAGTCATGCCACACACTGCCTCACTCAGCAACAAGAGCCGCCATGCTCGTGAGGATCAACACCCTCCTCCAAGGCTACTCCGGCATCAGATTTGAGATTCTGGAAGCAATCACCAAGCTCCTCAATCACAACATCACTCCATGCTTGCCTCTGCGTGGCACCGTCACTGCCTCCGGAGACCTGGTTCCTCTCTCCTACATTTCTGGTCTTCTCACCGGCAGGCCTAATTCCAAAGCTGTTGGACCTTCCGGTGAAGTTGTCAATGCCGAAGAGGCCTTTAAAATGGCTGGGATCGAGTCGGGATTTTTTGAGTTGCAGCCTAAGGAAGGCCTGGCTCTTGTTAATGGCACTGCAGTTGGCTCTGGCTTGGCCTCTATGGTGCTTTTTGAGACCAATGTGCTGGCAGTTTTGTCTGAACCGAAGCAAGATCGATATGCTCTCAGGACTTCACCTCAATGGCTTGGCCCACAGATTGAAGTCATCCGAGCATCAACTAAATCCATCGAACGGGAGATCAACTCTGTGAATGATAACCCCTTGATCGATGTTTCCAGGAACAAGGCTCTACATGGTGGCAACTTCCAGGGGACCCCAATTGGAGTCTCCATGGACAACACCCGCTTGGCCATTGCAGCCATTGGGAAGCTTATGTTTGCCCAGTTCTCAGAGCTTGTCAATGACTTCTACAACAATGGATTGCCATCAAATCTCTCTGGAAGCCGAAACCCGAGTCTGGATTATGGTTTCAAGGGAGCAGAAATTGCCATGGCTTCCTACTGTTCAGAGCTCCAGTTCTTGGCCAATCCTGTTACTAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAACTCCTTGGGCTTAATCTCCTCCAGGAAAACAGCTGAAGCGGTGGATATCTTGAAGCTCATGTCTACCACATACCTAGTGGCACTCTGCCAGGCCATTGATTTGAGGCATTTGGAGGAGAATTTGAAGAGCACTGTGAAGAAGACTGTAAGCCACGTAGCTAAGAAGACTCTAACCACGGGAGCCAATGGAGAACTCCACCCATCGAGATTCTGCGAGAAGGACTTGCTAAAAGTGGTGGATAGGGAACATGTATTCGCCTACATCGATGACCCCTGCAGCGCCACATATCCACTGATGCAGAAGGTGGGGTGGAGAGTGGAAACCCATCAATTCCAAACCGAATCAGGGAGTGCAGGTCATACCCATTGTATAAGTTTGTAA 1371 49.89 MSKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTVTASGDLVPLSYISGLLTGRPNSKAVGPSGEVVNAEEAFKMAGIESGFFELQPKEGLALVNGTAVGSGLASMVLFETNVLAVLSEPKQDRYALRTSPQWLGPQIEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGSRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSTTYLVALCQAIDLRHLEENLKSTVKKTVSHVAKKTLTTGANGELHPSRFCEKDLLKVVDREHVFAYIDDPCSATYPLMQKVGWRVETHQFQTESGSAGHTHCISL* 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 619736 622170 + Vvi16g58 Vvi16g58 777707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g58 456 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 1 184 - -
Vvi16g58 456 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 182 441 - -
Vvi16g58 456 SUPERFAMILY L-aspartase-like 2 442 IPR008948 GO:0003824
Vvi16g58 456 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 98 114 IPR022313 GO:0016841
Vvi16g58 456 CDD PAL-HAL 1 365 IPR001106 -
Vvi16g58 456 Pfam Aromatic amino acid lyase 2 183 IPR001106 -
Vvi16g58 456 Pfam Aromatic amino acid lyase 185 377 IPR001106 -
Vvi16g58 456 Gene3D - 1 162 IPR024083 -
Vvi16g58 456 PANTHER HISTIDINE AMMONIA-LYASE 182 441 IPR001106 -
Vvi16g58 456 PANTHER HISTIDINE AMMONIA-LYASE 1 184 IPR001106 -
Vvi16g58 456 Gene3D Fumarase/aspartase (Central domain) 173 425 - -
Vvi16g58 456 MobiDBLite consensus disorder prediction 1 22 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g58 K10775 - sind:105174307 723.776