Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g589 ATGAATACTACTTCTCCACCATATTCCGACCCTCACCCGCTCGTATGCAATTGGGATTCCCTGAATTTGCCTGATTCTGATGGAGGCAGCGAAGAGTTGATGCTGGCCTCCACACACCCGAAGAAGCGGGCTGGGAGGAAGAAGTTTCGGGAGACGCGGCACCCTGTGTACCGCGGCGTGCGGCGGAGGAACTCCGGGAAGTGGGTATGCGAGGTGAGGGAGCCCAACAAGACGTCCAGGATATGGCTGGGGACCGGAGGCGGCGGAGGCGTGAGGACGCCGGATAATGTGTTTGTTATGGATGAGGAGGACGTTTTTGGAATGCCGGGTCTGCTGGTGAATATGGCTGAGGGTCTGCTGATGCCTCCGCCGCATAGCGTGGCGGATGGCTACGGTGGAGATGACATGGCGGCGGATGCTGACATGTCGTTATGGATGAATCCAATATCATGTACTGAAGCAATATTTTTGGGGCCATGTAATATACTTTGGTTGAATATCTTTTTTATTTTCTCCTTTTTAAAATGGAAAATATAA 537 52.33 MNTTSPPYSDPHPLVCNWDSLNLPDSDGGSEELMLASTHPKKRAGRKKFRETRHPVYRGVRRRNSGKWVCEVREPNKTSRIWLGTGGGGGVRTPDNVFVMDEEDVFGMPGLLVNMAEGLLMPPPHSVADGYGGDDMAADADMSLWMNPISCTEAIFLGPCNILWLNIFFIFSFLKWKI* 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 15813712 15814830 - Vvi16g589 Vvi16g589 778238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g589 178 ProSiteProfiles AP2/ERF domain profile. 56 85 IPR001471 GO:0003700|GO:0006355
Vvi16g589 178 SMART rav1_2 56 104 IPR001471 GO:0003700|GO:0006355
Vvi16g589 178 Gene3D AP2/ERF domain 56 85 IPR036955 GO:0003700|GO:0006355
Vvi16g589 178 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 93 146 - -
Vvi16g589 178 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 29 85 - -
Vvi16g589 178 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 29 85 IPR045277 GO:0003700
Vvi16g589 178 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 93 146 IPR045277 GO:0003700
Vvi16g589 178 Pfam AP2 domain 55 85 IPR001471 GO:0003700|GO:0006355
Vvi16g589 178 SUPERFAMILY DNA-binding domain 56 85 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g402 Vvi16g589 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14145 PF00847 AP2 1.00E-05 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g589 - K09286 vvi:100245286 182.956