Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g60 ATGAGCAAAGGCACCGACAGCTATGGTGTCACCACTGGGTTTGGTGCCACTTCACATAGGAGAACCAAACAAGGTGGTGCCCTTCAGAAGGAGCTCATCAGGTTCTTGAATGCTGGGATATTTGGGAACGGAAGAGAGTCATGCCACACACTGCCTCACTCAGCAACAAGAGCCGCCATGCTCGTGAGGATCAACACCCTCCTCCAAGGCTACTCCGGCATCAGATTTGAGATTCTGGAAGCAATCACCAAGCTCCTCAATCACAACATCACTCCATGCTTGCCTCTGCGTGGCACCGTCACTGCCTCCGGAGACCTGGTTCCTCTCTCCTACATCGCTGGTCTTCTCACCGGCAGGCCTAATTCCAAAGCTGTTGGACCTTCCGGTGAAGTTGTCAATGCCGAAGAGGCCTTTAAAATGGCTGGGATCGAGTCGGGATTTTTTGAGTTGCAGCCTAAGGAAGGCCTGGCTCTTGTTAATGGCACTGCAGTTGGCTCTGGCTTGGCCTCTATGGTGCTTTTTGAGACCAATGTGCTGGCAGTTTTGTCTGAACCGAAGCAAGATCGATATGCTCTCAGGACTTCACCTCAATGGCTTGGCCCACAGATTGAAGTCATCCGAGCATCAACTAAATCCATCGAACGGGAGATCAACTCTGTGAATGATAACCCCTTGATCGATGTTTCCAGGAACAAGGCTCTACATGGTGGCAACTTCCAGGGGACCCCAATTGGAGTCTCCATGGACAACACCCGCTTGGCCATTGCAGCCATTGGGAAGCTTATGTTTGCCCAGTTCTCAGAGCTTGTCAATGACTTCTACAACAATGGACTGCCATCAAATCTCGCTGGAAGCCGAAACCCCAGTCTGGACTATGGTTTCAAGGGAGCAGAAATTGCCATGGCTTCCTACTGTTCAGAGCTCCAGTTCTTGGCCAATCCTGTCACCAACCATGTCGAAAGTGCTGAGCAACACAACCAAGATGTGAACTCCTTGGGCTTAATCTCCTCCCGGAAAACAGCTGAAGCGGTGGATATCTTGAAGCTCATGTCTACCACATACCTAGTGGCACTCTGCCAGGCCATTGATTTGAGGCATTTGGAGGAGAATTTGAAGAGCACGGTGAAGAAGACTGTCAGCCACGTAGCTAAGAAAACTCTAACCATTGGAGCCAATGGAGAACTCCACCCATCGAGATTCTGCGAGAAGGACTTGCTAAAAGTGGTGGATAGGGAACATGTATTTGCCTACATCGATGACCCCTGCAGCGCCACATATCCACTGATGCAGAAGATGGGGTGGAGAGTGTTTACTGCAATGTGTGAGGGGAAGATCATCGACCCTCTTCTGGATTGTCTCAGTGCTTGGAACGGTGCTCCTCTCCCAATCTGCTAG 1395 50.68 MSKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGRESCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTVTASGDLVPLSYIAGLLTGRPNSKAVGPSGEVVNAEEAFKMAGIESGFFELQPKEGLALVNGTAVGSGLASMVLFETNVLAVLSEPKQDRYALRTSPQWLGPQIEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLAGSRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVESAEQHNQDVNSLGLISSRKTAEAVDILKLMSTTYLVALCQAIDLRHLEENLKSTVKKTVSHVAKKTLTIGANGELHPSRFCEKDLLKVVDREHVFAYIDDPCSATYPLMQKMGWRVFTAMCEGKIIDPLLDCLSAWNGAPLPIC* 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 649921 652537 + Vvi16g60 Vvi16g60 777709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g60 464 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 182 432 - -
Vvi16g60 464 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 435 464 - -
Vvi16g60 464 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 1 184 - -
Vvi16g60 464 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 98 114 IPR022313 GO:0016841
Vvi16g60 464 CDD PAL-HAL 1 365 IPR001106 -
Vvi16g60 464 MobiDBLite consensus disorder prediction 1 23 - -
Vvi16g60 464 SUPERFAMILY L-aspartase-like 2 464 IPR008948 GO:0003824
Vvi16g60 464 Pfam Aromatic amino acid lyase 185 377 IPR001106 -
Vvi16g60 464 Pfam Aromatic amino acid lyase 2 183 IPR001106 -
Vvi16g60 464 PANTHER HISTIDINE AMMONIA-LYASE 435 464 IPR001106 -
Vvi16g60 464 PANTHER HISTIDINE AMMONIA-LYASE 182 432 IPR001106 -
Vvi16g60 464 PANTHER HISTIDINE AMMONIA-LYASE 1 184 IPR001106 -
Vvi16g60 464 Gene3D - 1 162 IPR024083 -
Vvi16g60 464 Gene3D Fumarase/aspartase (Central domain) 163 464 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g60 K10775 - sind:105174307 720.309