Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g602 ATGGCACCTTCACGGGTGGCTGGAAGTTTAGCTCAATCTTCCTCAAGTTCTGGTATCTTTTTCCAAGGAGACGGGCAGTCTCAGGCTGTACAAATTCTGGGCCGAGTGTTGGGGCGAGTTCGTTGGTTACAGATGCCAACTCGGCACTTTCAGGAGGTCCTCACTTGCAGAGAAGTGCAAGCATCAATACAGAGTCTTACATGCGCTTGCCTGCGTCACCCATGTCGTTCTCATCGAATAATATTACATCAAGGAGCTTCAAGTGCTACATCCTTGCCCACATCACAAGCAGGCCAAGTTTCACTTTCCATGAATCCACGGGTTCCTGCCTCATTCATTCAGGAACCCAATAATCCATCCCAGGTGCATAAGAAAGCCCGACTGGATATCAAACAGGAAGACATTTTGCCCCAGCAGATTGTGCAACAAATACTTCAAAGACAGGACCCAATGCAGTTGCAAGGCCACAATCCCCAGTTTCAAAGCTTGATTCAACAGCAAAGACTACGACAGCAACAGCAGATGTTGCAACACCACCTGCAACAACAGGGCATGCAACCAATATCTGCCATGAAGCGCCCCTATGATAGTGGTGTATGTGCTCGTCGGCTAATGCAATACCTATATCACCAGCGGCAACCTGACAAGACTATTGCCTATTGGAGGAAATTTGTGGCAGAGTATTATTCACCCCGTGCAAAGAAAAGATGGTGCTTGTCCTTATATGACAATGTTGGAAATCATGCACTGGGTGTTTTCCCCCAGGCAGCTATGGATGCATGGCATTGTGAAATTTGCAATTCTAAATCCGGAAGGGGGTTTGAGGCAACTTTTGAAGTACTCCCTCGACTTAATGAAATAAAATTTGGCAGTGGTGTCATTGATGAGCTTTTGTTTCTGGACTTGCCACGTGAATGTAGATTTTCTTCAGGAATAATGATGTTAGAATATGGGAAAGCAGTTCAGGAGAGTGTATATGAGCAACTCCGAGTTGTTCGTGAGGGTCAGCTTCGTATCATATTTACCCCTGATTTAAAGATATTATCCTGGGAATTTTGTGCCCAACACCATGAAGAACTTCTTCCTCGTAGGTTGGTAGCCCCACAGGTGAATCAGTTGGTGCAGGTTGCACAGAAATGCCAAAGCACAATTGCTGAAAGTGGATCTGATGGGATTTCTCAGCAGGACTTACAAACAAATAGCAACATGGTTTTGACAGCTGGGCGTCAGCTTGCAAGAAGTTTAGAGTCTCAGTCACTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAGATATCCGAGGTTGTCAATAGTATGAAAGACTTGATTGACTTCTGCAGGGAGAACAAAGTTGGGCCAATTGATGGGTTGAAAAGTTATCCTCGACATGCTAGTGCAGTGAAGCTTGAGATGCAAAAGATGCAGGAGATGGAACAGCTTGCAAATGTTCAGGGTCTGCCGACGGATCGCAATACCCTTAATAAGCTAATAGCATTGCATCCTGGTCTAAACAGCCATATGAGCAATAATCCTCACATGGTTAATCGTGGAGCTTTAAGTGGCTCGGCACAAGCTGCTTTAGCACTGACCAACTACCAGAATCTGCTGATGAGACAAAACTCCATGAATTCAAACCCTAGCTCGCTTCAGCAAGAGGGGCCATCTTCATTTAATAGCTCTAACCAGAGTCCATCTTCAACATTTCAGGGCCCTGCTACTTTGATTTCGGGATCCATGCACAACTTACCTGGTAGTGGTTTTTCCATAGCTTGCTCCAACAGAATCCTGGTCTATCCTCTCAAAGCAGCCAGGCTCTACAACAGCAGATGA 1839 45.51 MAPSRVAGSLAQSSSSSGIFFQGDGQSQAVQILGRVLGRVRWLQMPTRHFQEVLTCREVQASIQSLTCACLRHPCRSHRIILHQGASSATSLPTSQAGQVSLSMNPRVPASFIQEPNNPSQVHKKARLDIKQEDILPQQIVQQILQRQDPMQLQGHNPQFQSLIQQQRLRQQQQMLQHHLQQQGMQPISAMKRPYDSGVCARRLMQYLYHQRQPDKTIAYWRKFVAEYYSPRAKKRWCLSLYDNVGNHALGVFPQAAMDAWHCEICNSKSGRGFEATFEVLPRLNEIKFGSGVIDELLFLDLPRECRFSSGIMMLEYGKAVQESVYEQLRVVREGQLRIIFTPDLKILSWEFCAQHHEELLPRRLVAPQVNQLVQVAQKCQSTIAESGSDGISQQDLQTNSNMVLTAGRQLARSLESQSLNDLGFSKRYVRCLQISEVVNSMKDLIDFCRENKVGPIDGLKSYPRHASAVKLEMQKMQEMEQLANVQGLPTDRNTLNKLIALHPGLNSHMSNNPHMVNRGALSGSAQAALALTNYQNLLMRQNSMNSNPSSLQQEGPSSFNSSNQSPSSTFQGPATLISGSMHNLPGSGFSIACSNRILVYPLKAARLYNSR* 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 15985692 15992248 + Vvi16g602 Vvi16g602 778251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g602 612 Pfam LIM-domain binding protein 203 461 IPR029005 -
Vvi16g602 612 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 172 563 - -
Vvi16g602 612 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 106 177 - -
Vvi16g602 612 MobiDBLite consensus disorder prediction 543 575 - -
Vvi16g602 612 PANTHER LIM DOMAIN-BINDING PROTEIN 172 563 IPR029005 -
Vvi16g602 612 PANTHER LIM DOMAIN-BINDING PROTEIN 106 177 IPR029005 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g397 Vvi16g602 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g602 - - vvi:100265879 940.258