Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g604 ATGGCTTCATCTGCTGATTTTGTCTGGGAGTCCAAGCTGCCCTCAAATTACAAGTTTCTTGTCAAGAAATTGTTGGCTGAGGACCCCGAAAATTTGAGCAAGAAGGAAATTTATGCTAGACTGTGTCAAGCCAACAGCTTTGATGGTGCCAACAAGGAAGTTTGGTTGGAGAAAAGCTATGGTGGAATTTGCTTTGCTGTTTCTTGGAAGGCTTTGAGGATAACAGGGATTGATGATAGGAGGTACTGGAAACATTTGCCAGCTGAGGAATCAAGATTCCACTCAATGGCATATCTTCAACAAATATGGTGGTTTGAGGTGGAAGGAGAGCTGGAGTTTGAATTTCCAGCAGGAACATATAGCATATTTTTCCGAATTCAGCTGGGCAAAACCTCAAGAAGGCTTGGGAGGAAGGTCTGCAACATTGAGCGAGTACATGGCTGGGATATAAAGCCGGTTCGGTTTCAATTATCGACATCGGACGGTCAGCATGCCTTGTCGCAGTGTTATCTGTGTGAACCAGGGAAGTGGGTCCATTACCATGCGGGAGATTTCATGGTGGAGAAGCCTAATACATCCATGAAGGTCAAGTTTTCAATGACCCAGATTGATTGCACCCACACCAAAGGTGGCCTCTGCCTTGACTCAGTGTTCATATGCCCAGCCGAATATAGAGATAGGGTCAAGAATTTATGA 696 44.97 MASSADFVWESKLPSNYKFLVKKLLAEDPENLSKKEIYARLCQANSFDGANKEVWLEKSYGGICFAVSWKALRITGIDDRRYWKHLPAEESRFHSMAYLQQIWWFEVEGELEFEFPAGTYSIFFRIQLGKTSRRLGRKVCNIERVHGWDIKPVRFQLSTSDGQHALSQCYLCEPGKWVHYHAGDFMVEKPNTSMKVKFSMTQIDCTHTKGGLCLDSVFICPAEYRDRVKNL* 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 16005952 16008324 - Vvi16g604 Vvi16g604 778253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g604 231 Pfam Phloem protein 2 63 221 IPR025886 -
Vvi16g604 231 PANTHER F-BOX PROTEIN PP2-A14 2 229 - -
Vvi16g604 231 PANTHER F-BOX PROTEIN PP2-A15 2 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g604 - - - vvi:100248692 490.345
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi15g555 Vvi16g604 ECH
Vvi2g396 Vvi16g604 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g604 Blo06g01114 . . . . Bpe07g00950 . . . . . . . . . . . . . . . . . . Cla01g00547 Cam01g0572 Cec01g0562 Cco01g0588 Clacu01g0566 Cmu01g0538 Cre09g1969 . . . . . Csa05g00583 Chy09g00923 . . . Bda06g00670 Bda15g00737 . Bpe12g00417 Bma08g00341 . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g00591 . . Cme09g01452
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001664 6 3 1 3 3 2 3 2 2 2 2 2 2 2 2 3 2 3 3 2 2 2 2 2 2 2 1 3 2 2 70