Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g606 ATGGCTACATACACAATCATAGCAGATATCAGCCTCTTCTCCTTTTTGTACCCTCTTCTTCTGCTACCATTTTTGCTCATTTTCAAGCATATTTTCCTCAAATCTCCACCACTTCCACCAGGTCCATATCCATGGCCCATCATAGGAAACCTCCTCCAAATGGGGGGGAACCTTCATGTCAAACTTGCTAATCTCGCCAAACGCCATGGCCCACTCATGTCTCTCCGCCTCGGTACACAAATCATGGTGGTCGCATCGTCGTCTGCAGCAGCCATGGAAGTACTCAAGACCCATGACCGGACGCTCTCCGGCCGCTATGTCAGTACCACAATTCCAGTTAACAGCCCTAAGCTCAACCATTTGGCAATGGCGTTTGCCAAGGTCTGTAACAGCGACTGGAGGAATCTGAAAGCTATCTGCCGGATGGAGCTGTTTTCAGGCAAAGCAATGGAGTCTCGTGTGGAGTTGAGGGAGAGGAAGGTGATGGAATTGGTGGAGTTTTTGGAAAAAAAGGAAGGTGAAGTGGTGAAGGTTATGGATCTAGTGTATACTACTGTCTGTAATATACTTAGCAATAAGTTTTTTTCAATAGATTTTTCTGATTTTGAGGGTAGGGATGTCCGTGGAGTACTGTTGAAGGATCTCCTAAATGAAAATGCAGAGTTGGGGGCTACAAATATATTAGACTTCTATCCTATATTGGGTGGATTGGATATTCAGGGCATTCGGAAGAAATTGAAGGAGATCTTTAGGAGGATTCCCACTACTTGGGAGGACATTCTCAAAGAAAGAAGAAAGCAAAGGATTCATGGTTCCAGCCATGGAGACTTCTTGGATGCTTTGTTAGAAACTGGGTTTGAAGATGATCAGATCAACCATGTGATTATGGAGCTGTTCTTTGCTGGGCCAGAAACTAGTAGCTTGACAGTAGAATGGGCAATGGCGGAACTGATTAAAAATCAAGATGCCATGCATAAACTTTGCAACGAACTCACACAAATCATTGGTGAATCTCCAGTAAGAGAGTCCCATTTGCCTCATCTGCCCTATCTCCAAGCCTGTGTGAAAGAGACACTGAGATTGCACCCTACAGGACCACTGCTTCTTCCTCACCGAGCCACGGAGACATGCCAAATCATGGGCTACACAATTCCAAAGGACTCCATAATATTTGTGAACATGTGGGCAATGGGGAGAGACCCCGGGACTTGGGAGGATCCATTGAGCTTCAAACCAGAAAGGTTTCTGGATTCAAAGTTGGAATTCAAGGGAAACGATTTCGAGTATATACCATTCGGTGCAGGCAGGAGAATGTGTCCAGGAATGCCTCTGGCTGCTAGGCTAGTTCCCATGATTCTGGCAACGTTTGTCCGCCTGTTTGATTGGTCTACTCCGGGCGACATGGACTTTGCCGAGATTGACATGGAGGAGCGGTTTGTTATAACATTGAGGAAGGAACAACCACTGCGTCTTTTGAAGAAAAAGGCATTTAAGAGTATAAAAAATGCTTTCTCTATGAAGGATGATGGGGTAGCCTTGAATTCAAAGGAGTTAAAGAAAATGATCTCTAAGAAATCACTCACAGTATTGCGGTATCGAGGCATTATTTTCGTCAATACCATGGATCCAGACACGGTCACAGCAGATATCAGTATCTTCTCCTTCTTGTACGCTCTTCTTTTGCTACCATTTTTGGTCATCCTCAAGCACATTTTCCTCAAACCTCCACCACTTCCACCAGGTCCATATCCATGGCCTATTATCGGAAACCTCCTTCAAATGGGGAAGAACCCTCATGCCAAACTAGCCAACCTCGCCAAACTCCATGGCCCACTCATGTCCCTCCGCCTCGGTACACAACTGATGGTGGTGGCGTCCTCGCCTGCAGCAGCAATGGAAGTACTCAAGACCCATGACCGGGCCCTCTCTGGCCGGTACCTCAGTAGCTCAGTTCCAGTGAAGAACCCTAAACTCAACCATTTGTCAATAGTGTTTGCCAAGGACTGCAATACAAACTGGAAGAATTTGAGAGCTATTTGCCGGATGGAGCTGTTTTCGGGCAAAGCAATGGAGTCTCAGGTGGAGTTGAGGGAGAGGAAGGTGACGGAGTTGGTGGAGTTTTTGGCAACAAAGGAAGGTGAAGTAGTGAAGGTTATGGATCTAGTGTTTACTACTATTTGTAATATACTAAGCAATAAATTTTTCTCAATGGATCTTTGCGATTTTGAGGATGAGGGTAGAGTTGGGGGAGCATTGAAGGATCTCATACATAAGAATGCAGAATTCGGCGCTACTCCAAATTTATCAGATTATTATCCTATATTGGGTGGATTGGATATCCAGGGTATTAACAGGAAAGCCAAGGAGATGTTTGAGAGGATTCCCACTACTTGGGAGGACATTCTCAAAGAAAGAAGAACGCAAAGGAGTAATAGATCCAGCCATCGAGACTTCTTGGAGGCTCTGTTAGAAATTGGGTTTGAAGATGATCAGATCAACCAAGTGATTCTGGAGCTGTTCAGTGCTGGGGCAGAAACTAGTAGTTTGACGGTAGAATGGGCAATGGCAGAACTGATAAGAAACCAAGACGCCATGGATAAACTCCGCGGAGAACTCAGACAAATAGTCGGTGAATCTCCAGTAAGAGAATCCCATTTGCCTCGTCTGCCCTATCTCCAAGCCTGTGTGAAAGAGGCACTGAGATTACACCCTCCAGCACCACTACTCCTTCCTCACCTTGCCGCGGAAACATGCCAAGTCATGGGCTACACAATTCCGAAAGACTCGCAAATATTTGTGAACATTTGGGCGATGGCGAGAGACCCCAAGATTTGGGATGACCCATTGAGCTTTAAACCAGAAAGGTTTCTGGATTCAAAGTTGGACTTCAAGGGAAATGATTTCGAGTATATACCATTTGGCGCAGGAAGGAGAATATGCCCAGGATTGGCTTTGGGTGGTAGGCAAGTTCCCCTGATCCTAGCGACGTTTGTCCACTTATTTGGTTGGTCCCTTCCGGGCAACATGGACTCTGCCCAGCTAGACATGGAGGAATGGTTGGTTATTACATTGAGGAAGGAACAGCCGCTACGCCTTGTTCCTAGGGTTAGAAAATACTTCATTTTCATCAACACTATGGATTCAGACACAGTCACAGCAGATATCAGCCTCTCCTCTTTCGTATACGCTCTTCTTCTGCTACCATTTTTGCTCATTCTCAAGCATATTTTCTTGAAACCTCCACCACTTCCACCGGGTCCATATCCATGGCCTATCATCGGAAACCTCCTCCAACTGGGGAAGAACCCTCATGTCAAACTCGCCAGCCTCGCCAAACTCCATGGCCCACTCATGTCTCTACGCCTCGGTACACAGCTGATGGTGGTGGCATCCTCGCCTGCAGCAGCACTTGAAGTACTCAAGACCCATGACCGGACACTCTCTGGCCGGTACGTAAGTAGTTCACTATCAGTCAAGGACCCTAAACTTAACCATTTGTCACTAGCGTTTGCCAAGGAGTGCACCAACAACTGGAAGAATCTAAGAACCATTTGCCGGACGGAGATGTTTTCAGGCAAAGCAATGGAGTCTCATGTGGAGTTGAGGGAGAGGAAGGTGATGGAGTTGGTGGAGTTTTTGGCAACAAAGGAAGGTGAAGTGGTCAAGGTTATGGATCTAGTGTTTACTACTATTTGTAATATACTGAGCAATACGTTTTTTTCAATGGACCTTTGTGATTTTGAGCGTGAGGGTTTGAAGGATTTCATCTATAGAGCTGCAGAGTTGGGGGCTACTCCAAATCTATCAGACTTTTATCCTATATTGGACGGATTGAATCTGCACGGTTCTAAGAAGAAATCCAAGGAGGCGCTGGGGAGGATTCTCGCTACTTGGGAGGGGACTCTCAAAGAAAGAAGGAAGCAAAAGAATCCTGGTTCCAGCCATCGAGACCTCTTGGAGGCTTTTTTAGAAATTAGGTTTGAAGATGATCAGATCAACCAAGTGATTCTGGAGCTCTTCAGTGCCGGGGCAGACACTAGCACATTGACAATAGAATGGGCAATTACACAGCTGATTAGAAACCCAGATGTCATGTATAAACTTCGAGATGAACTCACAAAAATAATCGGTGAATCTCCAGTAAGAGAGTCCCATTTGCCTCATCTGCCCTATCTCCAAGCCTGTGTGAAAGAGACCCTGAGATTGCATCCTCCAGCACCACTACTCCTTCCTCACCGAGCCATGGAGACATGCCAAGTCATGGGCTACACAATTCCAAAAGACTCCCAAGTATTTGTGAACATTTGGGCTATGGGGAGAGACCCCAAGGTTTGGGATGACCCATTGAGCTTCACACCAGAAAGGTTTCTGGATTCAAAGTTGGAATTCAAGGGAAATGATTTCGAATATATACCATTTGGGGCAGGGAGGAGAATCTGTCCAGGAATGGCTTTGGGTGCTAGGCAAGTTCCCTTGGTTCTTGCAACGTTGGTCCACTTGTTTGATTGGTCTCTTCCGGACAATATGGACTCCGCCCAAATAGACATGGAGGAGTGGTTGGTTATTACATTGAGGAAGGAAAATCCACTGCGCCTTGTTCCTAAGGTTAGAAAATAA 4617 45.96 MATYTIIADISLFSFLYPLLLLPFLLIFKHIFLKSPPLPPGPYPWPIIGNLLQMGGNLHVKLANLAKRHGPLMSLRLGTQIMVVASSSAAAMEVLKTHDRTLSGRYVSTTIPVNSPKLNHLAMAFAKVCNSDWRNLKAICRMELFSGKAMESRVELRERKVMELVEFLEKKEGEVVKVMDLVYTTVCNILSNKFFSIDFSDFEGRDVRGVLLKDLLNENAELGATNILDFYPILGGLDIQGIRKKLKEIFRRIPTTWEDILKERRKQRIHGSSHGDFLDALLETGFEDDQINHVIMELFFAGPETSSLTVEWAMAELIKNQDAMHKLCNELTQIIGESPVRESHLPHLPYLQACVKETLRLHPTGPLLLPHRATETCQIMGYTIPKDSIIFVNMWAMGRDPGTWEDPLSFKPERFLDSKLEFKGNDFEYIPFGAGRRMCPGMPLAARLVPMILATFVRLFDWSTPGDMDFAEIDMEERFVITLRKEQPLRLLKKKAFKSIKNAFSMKDDGVALNSKELKKMISKKSLTVLRYRGIIFVNTMDPDTVTADISIFSFLYALLLLPFLVILKHIFLKPPPLPPGPYPWPIIGNLLQMGKNPHAKLANLAKLHGPLMSLRLGTQLMVVASSPAAAMEVLKTHDRALSGRYLSSSVPVKNPKLNHLSIVFAKDCNTNWKNLRAICRMELFSGKAMESQVELRERKVTELVEFLATKEGEVVKVMDLVFTTICNILSNKFFSMDLCDFEDEGRVGGALKDLIHKNAEFGATPNLSDYYPILGGLDIQGINRKAKEMFERIPTTWEDILKERRTQRSNRSSHRDFLEALLEIGFEDDQINQVILELFSAGAETSSLTVEWAMAELIRNQDAMDKLRGELRQIVGESPVRESHLPRLPYLQACVKEALRLHPPAPLLLPHLAAETCQVMGYTIPKDSQIFVNIWAMARDPKIWDDPLSFKPERFLDSKLDFKGNDFEYIPFGAGRRICPGLALGGRQVPLILATFVHLFGWSLPGNMDSAQLDMEEWLVITLRKEQPLRLVPRVRKYFIFINTMDSDTVTADISLSSFVYALLLLPFLLILKHIFLKPPPLPPGPYPWPIIGNLLQLGKNPHVKLASLAKLHGPLMSLRLGTQLMVVASSPAAALEVLKTHDRTLSGRYVSSSLSVKDPKLNHLSLAFAKECTNNWKNLRTICRTEMFSGKAMESHVELRERKVMELVEFLATKEGEVVKVMDLVFTTICNILSNTFFSMDLCDFEREGLKDFIYRAAELGATPNLSDFYPILDGLNLHGSKKKSKEALGRILATWEGTLKERRKQKNPGSSHRDLLEAFLEIRFEDDQINQVILELFSAGADTSTLTIEWAITQLIRNPDVMYKLRDELTKIIGESPVRESHLPHLPYLQACVKETLRLHPPAPLLLPHRAMETCQVMGYTIPKDSQVFVNIWAMGRDPKVWDDPLSFTPERFLDSKLEFKGNDFEYIPFGAGRRICPGMALGARQVPLVLATLVHLFDWSLPDNMDSAQIDMEEWLVITLRKENPLRLVPKVRK* 1539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 16027555 16046231 + Vvi16g606 Vvi16g606 778255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g606 1538 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 973 982 IPR017972 GO:0005506|GO:0016705
Vvi16g606 1538 SUPERFAMILY Cytochrome P450 39 492 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g606 1538 Gene3D Cytochrome P450 1078 1537 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g606 1538 PANTHER 3'-HYDROXYLASE ISOZYME, PUTATIVE-RELATED 1058 1538 - -
Vvi16g606 1538 PANTHER 3'-HYDROXYLASE ISOZYME, PUTATIVE-RELATED 15 494 - -
Vvi16g606 1538 PANTHER 3'-HYDROXYLASE ISOZYME, PUTATIVE-RELATED 553 1038 - -
Vvi16g606 1538 Gene3D Cytochrome P450 574 1041 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g606 1538 SUPERFAMILY Cytochrome P450 579 1037 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g606 1538 Gene3D Cytochrome P450 30 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g606 1538 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g606 1538 PRINTS E-class P450 group I signature 90 111 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g606 1538 PRINTS E-class P450 group I signature 185 203 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g606 1538 PRINTS E-class P450 group I signature 290 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g606 1538 PRINTS E-class P450 group I signature 310 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g606 1538 PRINTS E-class P450 group I signature 893 911 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g606 1538 PRINTS E-class P450 group I signature 934 958 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g606 1538 PRINTS E-class P450 group I signature 970 980 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g606 1538 PRINTS E-class P450 group I signature 980 1003 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g606 1538 PRINTS P450 superfamily signature 842 859 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g606 1538 PRINTS P450 superfamily signature 1394 1405 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g606 1538 PRINTS P450 superfamily signature 1471 1480 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g606 1538 SUPERFAMILY Cytochrome P450 1084 1537 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g606 1538 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 1058 1538 - -
Vvi16g606 1538 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 15 494 - -
Vvi16g606 1538 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 553 1038 - -
Vvi16g606 1538 Pfam Cytochrome P450 579 1016 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g606 1538 Pfam Cytochrome P450 39 481 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g606 1538 Pfam Cytochrome P450 1084 1523 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi16g606 1538 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 1473 1482 IPR017972 GO:0005506|GO:0016705
Vvi16g606 1538 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 432 441 IPR017972 GO:0005506|GO:0016705
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g606 - - - vvi:100267583 951.814
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g606 . Blo15g00156 . . Bpe03g00135 Bpe07g00949 Bma10g01211 . . . . . . . . . . . . . . . . . Cla01g00545 . . . . . . . Cone5ag0838 . . . Csa05g00580 Chy09g00925 . Blo07g00422 Blo09g00081 Bda06g00671 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g00589 . . Cme09g01454
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000276 0 5 1 0 1 4 0 5 5 7 5 5 3 10 7 9 5 5 4 5 6 6 4 5 7 13 5 4 4 6 146