Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g616 ATGGGGAGGATCAATGAAGATGGGTATGAGAGCATGTCTGGAAGTGGGAACTTAGATGGTGGATTGGAGGATGAGCAAGAAACCTTGGTACTTGAGAGGCCGGCCAAGAAACTGAAATACCATCGACATACTCAAGAGCAAATTAATGAGCTTGAAACTTGCTTCAAGGAATGGCCTCATCCTGACGAGAAACAAAGGTTGGACCTCAGTAGGAAGCTCAACTTGGAGCCTAGACAAGTGAAGTTCTGGTTTCAGAACCGGCGAACCCAGATGAAGAACCAGTTGGAGCGCCATGAGAATGTAATGCTTAGACAAGAAAATGACAAGCTTCGGGTTGAGAATGTTGCAATTAAGGATGCTGTGAGGAACCCAATATGCAACCACTGTGGTGGTGTGGCAATGCTTGGCAACATAACTATTGAAGAGAATCAACTAAGGGTTGAGAATGCCCAGTTAAGGGATGAACTAAGTCGGATCTGTGGCCTAGCAGAGAAGTTCTTGGGCAGGCCTGTCACACCTTTGGCGAGTCCCATTGCTCTACCAAGACCAAGCTCAAATTTGGAACTTGAGGTAGCGGGAAATGGCTCTGTGTTTGTGGAGCTTGCAGTGACTGCTATGGATGAATTGCTTCGGTTGGCTCAGGCTGATAGTCCCATTTGGATGACAAGCTTGGATGGAGGAAAGGAAACATTGAACCCTGCTTCAAGAGAGACTGGTATGGTAATGATCAACAGTTTAGCTCTTGTAGAGACATTGATGGATGGGAGTCGATGGGCACAAATGTTCCCATGTGTGATTGCTAAAGCTTCTACAACTGATGTGCTATCAAGTGGTATTGGAAGAACTAGGCATGGTGCTCTGCAACTGATGCATGCTGAGTTGCAAGTTCTTTCACCATTGGTACCGGTCCGGCAAGTGAAGTTTCTCCGGTTTTGCAAGCAACATGGGGAAGGATTATGGGCTGTGGTTGATGTGTCCATCGACACTGCTCTAGATGGTGCGAGCATAAATTCATTTGTTAACTGCCGACGACTTCTTTCTGGCTGTGTCGTGCAAGATCTTTCAAATGGTTACACTAGGGTTACCTGGATAGAACATTCAGAATATGATGAGAGTGCCGTCCACTATCTCTACCGATCCTTACTGAGCTCTGGATTGGGGTTTGGCGCACTGAGATGGCTTGCCACCTTACAGAGGCAGTGTGAGAGCATTGCAATCCTTTTGTCATCAACCGTCCCCTGCGAAGATCATCCAGTGCTGACACAAGCTGGTAGGAGAAGTCTGCTACAACTGACAAACCGAATGAGGGATAACTTCTGTGCTGGGGTTTGTGCTTCAACTGTTCGGATGTGGAACAAGCTCCATGTTGCTAGTCTTGGGGAGGATGTCAAGGTCATGACCCGGAAAAGTATGAATATTCCTGGTGAGCCTCCTGGAGTCATCTTGAGTGCTGCAACCTCTGTATGGATGCCTATAATGCATCAACAGTTATTTAACTTCTTGAGAGATGAGAGACAGAGGAGCAAGTGGGACATTTTATCCAATGGTGGGCCAATGCAAGAGATGATTCATATTCCAAAGGGCCAAACAAGTAGCAACTGTGTTTCTCTTCTTCGCCCTAATGCTAGAAACCAGAATGACAACACAATGCTGATACTGCAAGAGACATGGGCAGATGCATCGGGCTCACTTATAGTCTACGCTCCTCTTGATGTAGCATCAATGCGTGCGGTGATGACTGGTGGGGATTCAAGCTTCGTGGCTCTCTTGCCATCAGGATTTGCAATTGTTCCAGATGGTAGCAGCAACAAAGGCTCAGGGTCACTACTGACAGTTGCATTCCAGATATTGGTGAACAGCCTTCCAATGGCCAAACTCAATGTGGAGTCGGTTGAGACCGTGAACAGTCTTCTGTCCTGCACAATCAACAAGATCAAATCTGCAATCATCATCGCCAAAACCCTAAACCCGGGAAACTCATTTCACAAAATGCCAATCTTCTACTCTTCACCGATCAACCCCCTCAAATCGGTGTCGTTTCTTATCCGAAGCCTCACTTGGACGAGACCCATGTCGCAATCCACCTCCATTCCCAAGAAGCTCCAGCGTGTTCGCGATCACGGCTATGACAACTACATGGAAGTCGAGAAGAAGCTTCGCAAAATCCTCAAATTCCAAGACCTCTTTCTCTGCCAACCCCATCAAACCCTCCCATTGGTCTTGTTGAGTCCTAGGAAAGCAAATGTGGATAGGGAATTGGTTAACTATAGAAGGGACAGGGAAGATGATGAAATGGTGAGGATTCAAAGTGATTATGTTGAGAGTCGATTTGAAGGTTTTGTGGATGAAAACAATTTTAGGCAAGATGGTGAGAGAGGACGAGATTCAGACTTGAATTTGGATAGTGATGCTGGTTCTGATTTTTCAGATGAGGATAACAAATGTGAGGAAACAACGGACTTTCAGGGTCTGTTTGGGTGGTGGGAATTTTTTTTGTTTGGCTGTTTCTCATCCACTAGTTTCCAAGAAAATAATGCCGTGTCAGGCTTAAAAAGGTCAAAGATCTCCACATCCCCTGATTCGAAATTGTCCTCGCTCTGCTTCATCTATAAATTAAACATAAATTTATATTTCATAAATCACAACCATTCAAAGTAA 2658 45.56 MGRINEDGYESMSGSGNLDGGLEDEQETLVLERPAKKLKYHRHTQEQINELETCFKEWPHPDEKQRLDLSRKLNLEPRQVKFWFQNRRTQMKNQLERHENVMLRQENDKLRVENVAIKDAVRNPICNHCGGVAMLGNITIEENQLRVENAQLRDELSRICGLAEKFLGRPVTPLASPIALPRPSSNLELEVAGNGSVFVELAVTAMDELLRLAQADSPIWMTSLDGGKETLNPASRETGMVMINSLALVETLMDGSRWAQMFPCVIAKASTTDVLSSGIGRTRHGALQLMHAELQVLSPLVPVRQVKFLRFCKQHGEGLWAVVDVSIDTALDGASINSFVNCRRLLSGCVVQDLSNGYTRVTWIEHSEYDESAVHYLYRSLLSSGLGFGALRWLATLQRQCESIAILLSSTVPCEDHPVLTQAGRRSLLQLTNRMRDNFCAGVCASTVRMWNKLHVASLGEDVKVMTRKSMNIPGEPPGVILSAATSVWMPIMHQQLFNFLRDERQRSKWDILSNGGPMQEMIHIPKGQTSSNCVSLLRPNARNQNDNTMLILQETWADASGSLIVYAPLDVASMRAVMTGGDSSFVALLPSGFAIVPDGSSNKGSGSLLTVAFQILVNSLPMAKLNVESVETVNSLLSCTINKIKSAIIIAKTLNPGNSFHKMPIFYSSPINPLKSVSFLIRSLTWTRPMSQSTSIPKKLQRVRDHGYDNYMEVEKKLRKILKFQDLFLCQPHQTLPLVLLSPRKANVDRELVNYRRDREDDEMVRIQSDYVESRFEGFVDENNFRQDGERGRDSDLNLDSDAGSDFSDEDNKCEETTDFQGLFGWWEFFLFGCFSSTSFQENNAVSGLKRSKISTSPDSKLSSLCFIYKLNINLYFINHNHSK* 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 16145021 16162952 + Vvi16g616 Vvi16g616 778265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g616 885 ProSiteProfiles START domain profile. 191 406 IPR002913 GO:0008289
Vvi16g616 885 SMART HOX_1 36 98 IPR001356 GO:0003677
Vvi16g616 885 Pfam START domain 201 403 IPR002913 GO:0008289
Vvi16g616 885 CDD homeodomain 39 94 IPR001356 GO:0003677
Vvi16g616 885 Coils Coil 88 108 - -
Vvi16g616 885 SUPERFAMILY Homeodomain-like 25 94 IPR009057 -
Vvi16g616 885 MobiDBLite consensus disorder prediction 787 813 - -
Vvi16g616 885 ProSitePatterns 'Homeobox' domain signature. 69 92 IPR017970 GO:0000981|GO:0006355
Vvi16g616 885 SUPERFAMILY Bet v1-like 198 403 - -
Vvi16g616 885 SUPERFAMILY Bet v1-like 451 646 - -
Vvi16g616 885 Coils Coil 135 155 - -
Vvi16g616 885 CDD START_ArGLABRA2_like 196 402 - -
Vvi16g616 885 Pfam Homeodomain 39 93 IPR001356 GO:0003677
Vvi16g616 885 ProSiteProfiles 'Homeobox' domain profile. 34 94 IPR001356 GO:0003677
Vvi16g616 885 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 6 195 IPR042160 -
Vvi16g616 885 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 234 650 IPR042160 -
Vvi16g616 885 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 195 233 IPR042160 -
Vvi16g616 885 MobiDBLite consensus disorder prediction 1 22 - -
Vvi16g616 885 Gene3D - 25 110 - -
Vvi16g616 885 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 195 233 - -
Vvi16g616 885 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 6 195 - -
Vvi16g616 885 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 234 650 - -
Vvi16g616 885 SMART START_1 200 403 IPR002913 GO:0008289
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi15g561 Vvi16g616 ECH
Vvi2g724 Vvi16g616 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14150 PF01852 START 2.00E-45 CL0209 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g616 K09338 - vvi:100267477 1227.62