Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi16g619 | ATGATGATGGCGTTTAAGCTTGTGTGCTTTCATCTCTTTGTGTTTCAGCTTCTTTTCTGTGTCTCCAACGCCATTGCTGACCAAAATGGAGAAGACCCAGAAGCCAAACTACTCATTTCTTTCAAAAATGCTCTTCAAAACCCTCAAATGCTCTCTTCATGGAACTCTACCGTTTCTCGCTGTCAATGGGAAGGTGTGCTTTGCCAGAACGGCCGAGTCACCTCACTCCACTTGTTACTGGGTGATAATGAACTATCGGGTGAGATTCCTCGTCAACTAGGTGAGTTGACTCAGCTGATCGGAAACTTGACCCATCTCCGCCTGACTGATCTTTACATTGGTATCAACCACTTTTCCGGCCAGTTACCACCGGAAATCGGTAATCTTTCGAGTCTGCAGAACTTCTTTTCACCATCTAATCGGTTTTCTGGGAGGATCCCACCTGAGATTGGGAATTGTTCTATGCTTAATCACGTTAGCTTGAGTAATAACTTGTTATCTGGTTCAATTCCGAAGGAGCTTTGTAACGCAGAGTCGCTAATGGAGATTGATTTGGATAGTAATTTTCTTTCTGGGGGTATAGATGATACGTTTTTGAAGTGTAAAAACCTGACCCAGTTGGTTTTGGTGAATAACCAGATTGTTGGCTCCATACCTGAGTACCTCTCAGAGCTTCCTTTGATGGTTCTTGACCTTGATTCGAACAATTTCACGGGTTCTATACCTGTGAGTCTGTGGAACTTGGTGAGTTTGATGGAGTTTTCAGCTGCAAATAATCTCCTGGAGGGTTCTCTCCCACCAGAGATTGGCAATGCGGTTGCGTTGGAGAGGCTTGTTCTTAGTAACAACCGGTTGAAGGGCACAATACCTAGGGAGATTGGAAATTTGACATCCCTGTCTGTTCTTAATTTGAATTTAAATCTGCTTGAAGGGATTATTCCAATGGAGCTTGGTGATTGCATTTCACTCACTACATTGGACCTTGGAAACAACCTTCTCAATGGGTCAATTCCTGATAGAATTGCGGATTTGGCACAGCTTCAGTTATATGATCTGTCCTATAATAGACTGTCTGGTTCAATACCTGAAGAGTTAGGGAGCTGTGTGGTGGTGGTGGATCTTCTACTCAGCAATAACTTTCTTTCAGGAGAGATTCCAATCTCTCTCTCCCGGCTAACCAACCTTACAACCTTGGATTTATCTGGGAATTTGCTGACTGGTTCCATTCCATTGAAATTGGGCTACTCTCTTAAGCTCCAAGGCTTGTATCTGGGGAATAACCAGCTCACTGGCACCATCCCAGAAAGCTTAGGACGATTGAGTAGTTTGGTAAAGCTGAATTTGACAGGTAATCAGCTGTCCGGTTCAATCCCATTCAGCTTTGGGAACTTGACTGGGCTCACCCACTTTGATTTAAGTTCCAATGAACTTGATGGATTGCCAAGGTCTTTGGGCAATCTATCATACTTGACCAATTTGGATCTTCATCACAACATGTTTACTGGGGAGATTCCCACGGAGCTTGGGGACCTTATGCAGCTTGAGTATTTTGATGTTTCAGGTAATAGGCTTTGTGGGCAAATTCCAGAGAAGATATGCAGCCTTGTCAATCTGCTTTACCTGAATTTGGCCGAAAATAGATTGGAAGGCTCTATACCTAGAAGTGGTGTTTGCCAAAACCTATCCAAAGATTCACTGGCTGGTAACAAAGATTTGTGTGGAAGAAACCTTGGTTTAGAATGCCAATTCAAGACCTTTGGTAGAAAATCTTCATTGGTAAACACCTGGGTACTTGCAGGGATTGTTGTGGGATGTACTCTCATCACCCTAACTATTGCTTTTGGTCTTCGGAAATGGGTTATCAGAAACAGCAGGCAAAGCGATACAGAAGAGATTGAGGAAAGCAAATTAAACAGCTCTATAGATCAAAATCTCTACTTCTTAAGCAGCAGCAGATCAAAGGAGCCTCTTAGCATCAACGTGGCCATGTTCGAGCAGCCTCTGCTAAAACTGACTTTAGTCGATATCCTTGAAGCCACCAACAATTTCTGCAAGACAAACGTGATTGGAGATGGAGGCTTTGGAACTGTCTACAAAGCTGCTTTACCTAACGGAAAAATAGTTGCAGTCAAGAAGCTAAACCAAGCCAAGACACAGGGTCATCGAGAATTTCTGGCAGAAATGGAAACTCTAGGTAAGGTCAAGCACAGAAACCTTGTACCCCTGCTGGGGTACTGCTCTTTTGGTGAGGAGAAGTTTCTAGTATACGAGTATATGGTAAATGGGAGCTTGGATCTATGGCTGAGGAACCGCACTGGGGCTCTTGAAGCCTTGGACTGGACAAAACGCTTCAAAATTGCAATGGGGGCGGCTCGTGGGCTAGCATTTCTTCACCATGGCTTCATCCCCCACATCATTCACCGCGACATTAAAGCCAGCAACATCTTGCTGAACGAAGACTTTGAGGCGAAAGTTGCAGACTTTGGGCTGGCGAGGTTGATCAGTGCCTGTGAAACTCATGTGAGTACCGACATAGCTGGGACGTTCGGGTACATTCCACCAGAGTATGGCCTAAGCTGGAGGTCTACAACAAGGGGGGACGTCTACAGTTTTGGAGTGATTCTGCTGGAACTGGTTACTGGGAAGGAGCCAACAGGACCTGATTTCAAGGACTTTGAAGGAGGGAATCTAGTGGGGTGGGTGTTTGAGAAGATGAGGAAGGGTGAGGCTGCAGAAGTGCTGGATCCAACGGTTGTGAGGGCGGAATTGAAGCACATAATGCTTCAAATTCTGCAGATTGCTGCAATATGCCTATCTGAAAATCCAGCTAAAAGGCCTACCATGCTTCATGTGTTGAAGTTTCTGAAAGGGATCAAAGATGAGTGA | 2886 | 44.7 | MMMAFKLVCFHLFVFQLLFCVSNAIADQNGEDPEAKLLISFKNALQNPQMLSSWNSTVSRCQWEGVLCQNGRVTSLHLLLGDNELSGEIPRQLGELTQLIGNLTHLRLTDLYIGINHFSGQLPPEIGNLSSLQNFFSPSNRFSGRIPPEIGNCSMLNHVSLSNNLLSGSIPKELCNAESLMEIDLDSNFLSGGIDDTFLKCKNLTQLVLVNNQIVGSIPEYLSELPLMVLDLDSNNFTGSIPVSLWNLVSLMEFSAANNLLEGSLPPEIGNAVALERLVLSNNRLKGTIPREIGNLTSLSVLNLNLNLLEGIIPMELGDCISLTTLDLGNNLLNGSIPDRIADLAQLQLYDLSYNRLSGSIPEELGSCVVVVDLLLSNNFLSGEIPISLSRLTNLTTLDLSGNLLTGSIPLKLGYSLKLQGLYLGNNQLTGTIPESLGRLSSLVKLNLTGNQLSGSIPFSFGNLTGLTHFDLSSNELDGLPRSLGNLSYLTNLDLHHNMFTGEIPTELGDLMQLEYFDVSGNRLCGQIPEKICSLVNLLYLNLAENRLEGSIPRSGVCQNLSKDSLAGNKDLCGRNLGLECQFKTFGRKSSLVNTWVLAGIVVGCTLITLTIAFGLRKWVIRNSRQSDTEEIEESKLNSSIDQNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATNNFCKTNVIGDGGFGTVYKAALPNGKIVAVKKLNQAKTQGHREFLAEMETLGKVKHRNLVPLLGYCSFGEEKFLVYEYMVNGSLDLWLRNRTGALEALDWTKRFKIAMGAARGLAFLHHGFIPHIIHRDIKASNILLNEDFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGLSWRSTTRGDVYSFGVILLELVTGKEPTGPDFKDFEGGNLVGWVFEKMRKGEAAEVLDPTVVRAELKHIMLQILQIAAICLSENPAKRPTMLHVLKFLKGIKDE* | 962 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 16185825 | 16189731 | + | Vvi16g619 | Vvi16g619 | 778268 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi16g619 | 961 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 | 108 | 961 | - | - | |
Vvi16g619 | 961 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 | 15 | 99 | - | - | |
Vvi16g619 | 961 | ProSitePatterns | Protein kinases ATP-binding region signature. | 689 | 712 | IPR017441 | GO:0005524 | |
Vvi16g619 | 961 | Gene3D | Transferase(Phosphotransferase) domain 1 | 759 | 961 | - | - | |
Vvi16g619 | 961 | SUPERFAMILY | L domain-like | 37 | 322 | - | - | |
Vvi16g619 | 961 | Gene3D | Phosphorylase Kinase; domain 1 | 645 | 758 | - | - | |
Vvi16g619 | 961 | SMART | serkin_6 | 683 | 955 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi16g619 | 961 | SMART | LRR_sd22_2 | 201 | 224 | - | - | |
Vvi16g619 | 961 | SMART | LRR_sd22_2 | 511 | 537 | - | - | |
Vvi16g619 | 961 | SMART | LRR_sd22_2 | 392 | 413 | - | - | |
Vvi16g619 | 961 | SMART | LRR_sd22_2 | 464 | 489 | - | - | |
Vvi16g619 | 961 | ProSiteProfiles | Protein kinase domain profile. | 683 | 961 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi16g619 | 961 | Pfam | Protein tyrosine and serine/threonine kinase | 686 | 955 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi16g619 | 961 | Gene3D | Ribonuclease Inhibitor | 79 | 311 | IPR032675 | - | |
Vvi16g619 | 961 | Gene3D | Ribonuclease Inhibitor | 312 | 586 | IPR032675 | - | |
Vvi16g619 | 961 | Gene3D | Ribonuclease Inhibitor | 24 | 78 | IPR032675 | - | |
Vvi16g619 | 961 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 | 15 | 99 | - | - | |
Vvi16g619 | 961 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 | 108 | 961 | - | - | |
Vvi16g619 | 961 | SUPERFAMILY | Protein kinase-like (PK-like) | 664 | 955 | IPR011009 | - | |
Vvi16g619 | 961 | Pfam | Leucine rich repeat N-terminal domain | 32 | 68 | IPR013210 | - | |
Vvi16g619 | 961 | SMART | LRR_typ_2 | 296 | 319 | IPR003591 | - | |
Vvi16g619 | 961 | SMART | LRR_typ_2 | 440 | 463 | IPR003591 | - | |
Vvi16g619 | 961 | SMART | LRR_typ_2 | 535 | 560 | IPR003591 | - | |
Vvi16g619 | 961 | SMART | LRR_typ_2 | 464 | 487 | IPR003591 | - | |
Vvi16g619 | 961 | SMART | LRR_typ_2 | 392 | 416 | IPR003591 | - | |
Vvi16g619 | 961 | SMART | LRR_typ_2 | 344 | 368 | IPR003591 | - | |
Vvi16g619 | 961 | SUPERFAMILY | RNI-like | 230 | 555 | - | - | |
Vvi16g619 | 961 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 805 | 817 | IPR008271 | GO:0004672|GO:0006468 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76276 | PF07714 | PK_Tyr_Ser-Thr | 2.30E-46 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi16g619 | - | - | vvi:100260549 | 1469.52 |