Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g619 ATGATGATGGCGTTTAAGCTTGTGTGCTTTCATCTCTTTGTGTTTCAGCTTCTTTTCTGTGTCTCCAACGCCATTGCTGACCAAAATGGAGAAGACCCAGAAGCCAAACTACTCATTTCTTTCAAAAATGCTCTTCAAAACCCTCAAATGCTCTCTTCATGGAACTCTACCGTTTCTCGCTGTCAATGGGAAGGTGTGCTTTGCCAGAACGGCCGAGTCACCTCACTCCACTTGTTACTGGGTGATAATGAACTATCGGGTGAGATTCCTCGTCAACTAGGTGAGTTGACTCAGCTGATCGGAAACTTGACCCATCTCCGCCTGACTGATCTTTACATTGGTATCAACCACTTTTCCGGCCAGTTACCACCGGAAATCGGTAATCTTTCGAGTCTGCAGAACTTCTTTTCACCATCTAATCGGTTTTCTGGGAGGATCCCACCTGAGATTGGGAATTGTTCTATGCTTAATCACGTTAGCTTGAGTAATAACTTGTTATCTGGTTCAATTCCGAAGGAGCTTTGTAACGCAGAGTCGCTAATGGAGATTGATTTGGATAGTAATTTTCTTTCTGGGGGTATAGATGATACGTTTTTGAAGTGTAAAAACCTGACCCAGTTGGTTTTGGTGAATAACCAGATTGTTGGCTCCATACCTGAGTACCTCTCAGAGCTTCCTTTGATGGTTCTTGACCTTGATTCGAACAATTTCACGGGTTCTATACCTGTGAGTCTGTGGAACTTGGTGAGTTTGATGGAGTTTTCAGCTGCAAATAATCTCCTGGAGGGTTCTCTCCCACCAGAGATTGGCAATGCGGTTGCGTTGGAGAGGCTTGTTCTTAGTAACAACCGGTTGAAGGGCACAATACCTAGGGAGATTGGAAATTTGACATCCCTGTCTGTTCTTAATTTGAATTTAAATCTGCTTGAAGGGATTATTCCAATGGAGCTTGGTGATTGCATTTCACTCACTACATTGGACCTTGGAAACAACCTTCTCAATGGGTCAATTCCTGATAGAATTGCGGATTTGGCACAGCTTCAGTTATATGATCTGTCCTATAATAGACTGTCTGGTTCAATACCTGAAGAGTTAGGGAGCTGTGTGGTGGTGGTGGATCTTCTACTCAGCAATAACTTTCTTTCAGGAGAGATTCCAATCTCTCTCTCCCGGCTAACCAACCTTACAACCTTGGATTTATCTGGGAATTTGCTGACTGGTTCCATTCCATTGAAATTGGGCTACTCTCTTAAGCTCCAAGGCTTGTATCTGGGGAATAACCAGCTCACTGGCACCATCCCAGAAAGCTTAGGACGATTGAGTAGTTTGGTAAAGCTGAATTTGACAGGTAATCAGCTGTCCGGTTCAATCCCATTCAGCTTTGGGAACTTGACTGGGCTCACCCACTTTGATTTAAGTTCCAATGAACTTGATGGATTGCCAAGGTCTTTGGGCAATCTATCATACTTGACCAATTTGGATCTTCATCACAACATGTTTACTGGGGAGATTCCCACGGAGCTTGGGGACCTTATGCAGCTTGAGTATTTTGATGTTTCAGGTAATAGGCTTTGTGGGCAAATTCCAGAGAAGATATGCAGCCTTGTCAATCTGCTTTACCTGAATTTGGCCGAAAATAGATTGGAAGGCTCTATACCTAGAAGTGGTGTTTGCCAAAACCTATCCAAAGATTCACTGGCTGGTAACAAAGATTTGTGTGGAAGAAACCTTGGTTTAGAATGCCAATTCAAGACCTTTGGTAGAAAATCTTCATTGGTAAACACCTGGGTACTTGCAGGGATTGTTGTGGGATGTACTCTCATCACCCTAACTATTGCTTTTGGTCTTCGGAAATGGGTTATCAGAAACAGCAGGCAAAGCGATACAGAAGAGATTGAGGAAAGCAAATTAAACAGCTCTATAGATCAAAATCTCTACTTCTTAAGCAGCAGCAGATCAAAGGAGCCTCTTAGCATCAACGTGGCCATGTTCGAGCAGCCTCTGCTAAAACTGACTTTAGTCGATATCCTTGAAGCCACCAACAATTTCTGCAAGACAAACGTGATTGGAGATGGAGGCTTTGGAACTGTCTACAAAGCTGCTTTACCTAACGGAAAAATAGTTGCAGTCAAGAAGCTAAACCAAGCCAAGACACAGGGTCATCGAGAATTTCTGGCAGAAATGGAAACTCTAGGTAAGGTCAAGCACAGAAACCTTGTACCCCTGCTGGGGTACTGCTCTTTTGGTGAGGAGAAGTTTCTAGTATACGAGTATATGGTAAATGGGAGCTTGGATCTATGGCTGAGGAACCGCACTGGGGCTCTTGAAGCCTTGGACTGGACAAAACGCTTCAAAATTGCAATGGGGGCGGCTCGTGGGCTAGCATTTCTTCACCATGGCTTCATCCCCCACATCATTCACCGCGACATTAAAGCCAGCAACATCTTGCTGAACGAAGACTTTGAGGCGAAAGTTGCAGACTTTGGGCTGGCGAGGTTGATCAGTGCCTGTGAAACTCATGTGAGTACCGACATAGCTGGGACGTTCGGGTACATTCCACCAGAGTATGGCCTAAGCTGGAGGTCTACAACAAGGGGGGACGTCTACAGTTTTGGAGTGATTCTGCTGGAACTGGTTACTGGGAAGGAGCCAACAGGACCTGATTTCAAGGACTTTGAAGGAGGGAATCTAGTGGGGTGGGTGTTTGAGAAGATGAGGAAGGGTGAGGCTGCAGAAGTGCTGGATCCAACGGTTGTGAGGGCGGAATTGAAGCACATAATGCTTCAAATTCTGCAGATTGCTGCAATATGCCTATCTGAAAATCCAGCTAAAAGGCCTACCATGCTTCATGTGTTGAAGTTTCTGAAAGGGATCAAAGATGAGTGA 2886 44.7 MMMAFKLVCFHLFVFQLLFCVSNAIADQNGEDPEAKLLISFKNALQNPQMLSSWNSTVSRCQWEGVLCQNGRVTSLHLLLGDNELSGEIPRQLGELTQLIGNLTHLRLTDLYIGINHFSGQLPPEIGNLSSLQNFFSPSNRFSGRIPPEIGNCSMLNHVSLSNNLLSGSIPKELCNAESLMEIDLDSNFLSGGIDDTFLKCKNLTQLVLVNNQIVGSIPEYLSELPLMVLDLDSNNFTGSIPVSLWNLVSLMEFSAANNLLEGSLPPEIGNAVALERLVLSNNRLKGTIPREIGNLTSLSVLNLNLNLLEGIIPMELGDCISLTTLDLGNNLLNGSIPDRIADLAQLQLYDLSYNRLSGSIPEELGSCVVVVDLLLSNNFLSGEIPISLSRLTNLTTLDLSGNLLTGSIPLKLGYSLKLQGLYLGNNQLTGTIPESLGRLSSLVKLNLTGNQLSGSIPFSFGNLTGLTHFDLSSNELDGLPRSLGNLSYLTNLDLHHNMFTGEIPTELGDLMQLEYFDVSGNRLCGQIPEKICSLVNLLYLNLAENRLEGSIPRSGVCQNLSKDSLAGNKDLCGRNLGLECQFKTFGRKSSLVNTWVLAGIVVGCTLITLTIAFGLRKWVIRNSRQSDTEEIEESKLNSSIDQNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATNNFCKTNVIGDGGFGTVYKAALPNGKIVAVKKLNQAKTQGHREFLAEMETLGKVKHRNLVPLLGYCSFGEEKFLVYEYMVNGSLDLWLRNRTGALEALDWTKRFKIAMGAARGLAFLHHGFIPHIIHRDIKASNILLNEDFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGLSWRSTTRGDVYSFGVILLELVTGKEPTGPDFKDFEGGNLVGWVFEKMRKGEAAEVLDPTVVRAELKHIMLQILQIAAICLSENPAKRPTMLHVLKFLKGIKDE* 962
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 16185825 16189731 + Vvi16g619 Vvi16g619 778268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g619 961 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 108 961 - -
Vvi16g619 961 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 15 99 - -
Vvi16g619 961 ProSitePatterns Protein kinases ATP-binding region signature. 689 712 IPR017441 GO:0005524
Vvi16g619 961 Gene3D Transferase(Phosphotransferase) domain 1 759 961 - -
Vvi16g619 961 SUPERFAMILY L domain-like 37 322 - -
Vvi16g619 961 Gene3D Phosphorylase Kinase; domain 1 645 758 - -
Vvi16g619 961 SMART serkin_6 683 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g619 961 SMART LRR_sd22_2 201 224 - -
Vvi16g619 961 SMART LRR_sd22_2 511 537 - -
Vvi16g619 961 SMART LRR_sd22_2 392 413 - -
Vvi16g619 961 SMART LRR_sd22_2 464 489 - -
Vvi16g619 961 ProSiteProfiles Protein kinase domain profile. 683 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g619 961 Pfam Protein tyrosine and serine/threonine kinase 686 955 IPR001245 GO:0004672|GO:0006468
Vvi16g619 961 Gene3D Ribonuclease Inhibitor 79 311 IPR032675 -
Vvi16g619 961 Gene3D Ribonuclease Inhibitor 312 586 IPR032675 -
Vvi16g619 961 Gene3D Ribonuclease Inhibitor 24 78 IPR032675 -
Vvi16g619 961 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 15 99 - -
Vvi16g619 961 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 108 961 - -
Vvi16g619 961 SUPERFAMILY Protein kinase-like (PK-like) 664 955 IPR011009 -
Vvi16g619 961 Pfam Leucine rich repeat N-terminal domain 32 68 IPR013210 -
Vvi16g619 961 SMART LRR_typ_2 296 319 IPR003591 -
Vvi16g619 961 SMART LRR_typ_2 440 463 IPR003591 -
Vvi16g619 961 SMART LRR_typ_2 535 560 IPR003591 -
Vvi16g619 961 SMART LRR_typ_2 464 487 IPR003591 -
Vvi16g619 961 SMART LRR_typ_2 392 416 IPR003591 -
Vvi16g619 961 SMART LRR_typ_2 344 368 IPR003591 -
Vvi16g619 961 SUPERFAMILY RNI-like 230 555 - -
Vvi16g619 961 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76276 PF07714 PK_Tyr_Ser-Thr 2.30E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g619 - - vvi:100260549 1469.52