Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g620 ATGTCTAGGCCACCGGTGGAGCAGAGCGGCGGCGAGTCACAGAAATCTCTTCCGACGCCGTTTCTGACGAAAACCTATCAGCTGGTTGAGGATCGGACAGTGGACGATGTGATTTCGTGGAATGAAGACGGATCTGCTTTCGTCGTGTGGAACACTGCCGTGTTGGCCAGAGATTTGCTTCCTAAGTACTTCAAGCACAACAATTTCTCCAGCTTCGTTCGACAACTTAACACCTACGGATTTCGAAAGGTCGTACCTGATCGATGGGAATTCTCCAACGACTGCTTTCGCCGAGGCGAAAAACGCCTTTTATGCGACATACAACGGCGGAGAATCTCTTCGACGGCCCCGATCTCGCCGGTATCGTCGTCAAATTGTGCTGACGAACGATTGATCTCGTCGAACTCGCCCCCGGCGACCACGACCACACCACATGCCACCAGTAATACTGCCGGACTGATAGATGAAAATGAAAGATTAAGGAAAGAGAACGTGGAGCTTAATCGAGAACTTAACCGGATGAAGACTCTTTGCAACAACATCTTCGCTCTGATATCGTCAAACTATACTAACAATATTTTCGGAAATGTTTCGCAAACGGACAAACCTCTGAATCGGTTCCCGGAGAAGCAGTTCTCCAGCGAGATGATGATAGAGGAAGAAATGACTCCTCGATTGTTCGGTGTTGCCATTGGGGCGAAGCGTGCGAGGGAAGGAGAGGGTGGGTTTGGTGGCAGACCCGGATCCGGTACAGGAACTCCAACGGCCTTGGTCGGAGCAAAACCTGAATTAATGCCATCCTCATTCTCCAACCACAAAAAAAAATGTCGTGTTTTCTTTGCTTGCATCTCTCCTCTTCATTCATTTTTTTTATATTTTATATCTTTTTAA 891 48.15 MSRPPVEQSGGESQKSLPTPFLTKTYQLVEDRTVDDVISWNEDGSAFVVWNTAVLARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFRRGEKRLLCDIQRRRISSTAPISPVSSSNCADERLISSNSPPATTTTPHATSNTAGLIDENERLRKENVELNRELNRMKTLCNNIFALISSNYTNNIFGNVSQTDKPLNRFPEKQFSSEMMIEEEMTPRLFGVAIGAKRAREGEGGFGGRPGSGTGTPTALVGAKPELMPSSFSNHKKKCRVFFACISPLHSFFLYFISF* 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 16193300 16199121 - Vvi16g620 Vvi16g620 778269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g620 296 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi16g620 296 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi16g620 296 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi16g620 296 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 240 IPR027725 -
Vvi16g620 296 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi16g620 296 SUPERFAMILY Winged helix DNA-binding domain 18 110 IPR036390 -
Vvi16g620 296 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi16g620 296 Coils Coil 150 177 - -
Vvi16g620 296 MobiDBLite consensus disorder prediction 116 151 - -
Vvi16g620 296 Gene3D - 13 111 IPR036388 -
Vvi16g620 296 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 8 240 - -
Vvi16g620 296 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g620 K09419 HSFF; heat shock transcription factor, other eukaryote - vvi:100243443 472.241
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g620 . Blo15g00160 . . . Bpe07g00947 . . Cmo16g00141 Cmo18g01259 . Cma15g01203 . Car15g01090 Sed01g3914 . Cpe14g00115 Bhi01g01343 Tan01g0269 Cmetu06g2712 Lac11g2126 Hepe07g0173 Mch10g0169 . Cla01g00293 Cam01g0304 Cec01g0295 Cco01g0311 Clacu01g0304 Cmu01g0289 . . . . . . Csa05g00316 Chy09g01192 Cme06g00981 . . Bda06g00674 . . . . Bma12g01125 . . Cmo15g01268 Cma16g00136 Cma18g01236 Car16g00120 Car18g01140 Cpe09g00100 Cpe13g00172 Bhi12g00210 . . Lac11g2126 Hepe06g1576 . Lcy12g1687 . . . . . . . . Csa03g01695 Chy06g00930 Cme09g01727
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi1g517 . 7 238 HSF AT4G17750 50.2 4.0e-57 219.5
Vvi11g164 . 414 613 HSF AT4G17750 51.8 3.5e-53 206.5
Vvi4g88 . 22 194 HSF AT4G17750 57.6 3.3e-51 199.9
Vvi12g111 ECH 1 187 HSF AT4G17750 51.0 2.4e-46 183.7
Vvi10g260 ECH 7 146 HSF AT4G17750 57.6 6.7e-44 175.6
Vvi5g557 . 9 105 HSF AT4G17750 79.4 2.1e-42 170.6
Vvi16g112 . 1 86 HSF AT4G17750 87.2 2.0e-40 164.1
Vvi18g752 . 20 118 HSF AT4G17750 71.7 1.1e-38 158.3
Vvi2g380 . 20 115 HSF AT4G17750 70.8 1.0e-36 151.8
Vvi4g88 . 22 198 HSF AT5G16820 56.6 3.5e-50 196.4
Vvi11g164 . 415 613 HSF AT5G16820 51.7 6.7e-49 192.2
Vvi12g111 ECH 1 187 HSF AT5G16820 53.5 1.9e-48 190.7
Vvi10g260 ECH 9 146 HSF AT5G16820 55.0 6.3e-39 159.1
Vvi16g112 . 1 87 HSF AT5G16820 85.1 2.4e-38 157.1
Vvi5g557 . 10 102 HSF AT5G16820 77.4 9.0e-38 155.2
Vvi4g88 . 22 182 HSF AT1G32330 54.7 1.8e-46 184.1
Vvi10g260 ECH 7 146 HSF AT1G32330 59.6 3.4e-45 179.9
Vvi16g112 . 1 87 HSF AT1G32330 83.9 4.3e-40 162.9
Vvi5g557 . 4 102 HSF AT1G32330 75.8 5.7e-40 162.5
Vvi18g752 . 20 154 HSF AT1G32330 53.6 4.1e-38 156.4
Vvi8g1038 . 97 275 HSF AT3G02990 55.1 1.4e-51 201.1
Vvi12g111 ECH 1 200 HSF AT3G02990 50.7 7.7e-50 195.3
Vvi4g88 . 22 194 HSF AT3G02990 54.7 1.6e-47 187.6
Vvi5g557 . 10 120 HSF AT3G02990 70.3 1.1e-40 164.9
Vvi16g112 . 1 84 HSF AT3G02990 88.1 1.2e-39 161.4
Vvi10g260 ECH 9 146 HSF AT3G02990 53.2 1.0e-38 158.3
Vvi18g752 . 8 154 HSF AT3G02990 50.9 2.2e-36 150.6
Vvi4g88 . 21 284 HSF AT2G26150 53.3 2.0e-71 266.5
Vvi11g164 . 404 630 HSF AT2G26150 54.7 9.6e-66 247.7
Vvi10g260 ECH 7 146 HSF AT2G26150 57.9 6.7e-43 171.8
Vvi5g557 . 1 102 HSF AT2G26150 73.5 1.9e-42 170.2
Vvi10g260 ECH 7 109 HSF AT5G03720 62.1 2.5e-36 150.2
Vvi18g752 . 24 145 HSF AT4G18880 56.6 2.9e-37 153.3
Vvi10g260 ECH 11 110 HSF AT4G13980 76.0 1.7e-41 167.5
Vvi11g164 . 404 611 HSF AT3G22830 50.7 1.9e-57 220.3
Vvi4g88 . 19 205 HSF AT3G22830 53.3 1.8e-50 197.2
Vvi5g557 . 1 102 HSF AT3G22830 76.5 1.8e-42 170.6
Vvi10g260 ECH 9 147 HSF AT3G22830 52.4 2.2e-37 153.7
Vvi5g557 . 1 109 HSF AT3G51910 66.1 3.5e-39 159.1
Vvi11g164 . 405 601 HSF AT3G63350 50.3 4.6e-50 195.3
Vvi1g517 . 1 241 HSF AT1G67970 55.4 1.7e-68 256.9
Vvi11g164 . 409 613 HSF AT5G54070 52.1 6.4e-51 198.4
Vvi7g1074 . 2 287 HSF AT4G36990 52.6 1.5e-69 260.0
Vvi16g620 . 13 171 HSF AT4G36990 54.8 3.2e-43 172.6
Vvi7g1074 . 3 197 HSF AT5G62020 54.3 1.7e-42 170.2
Vvi18g752 . 17 117 HSF AT5G62020 66.3 6.6e-39 158.3
Vvi2g380 . 16 287 HSF AT4G11660 51.4 5.7e-72 268.5
Vvi18g752 . 16 119 HSF AT4G11660 76.0 9.2e-46 181.4
Vvi6g975 . 16 115 HSF AT4G11660 70.0 6.9e-41 165.2
Vvi7g1074 . 2 98 HSF AT4G11660 70.1 2.0e-40 163.7
Vvi8g1462 . 15 112 HSF AT4G11660 71.4 3.2e-38 156.4
Vvi8g1462 . 19 113 HSF AT2G41690 81.1 3.4e-41 165.6
Vvi18g752 . 1 279 HSF AT1G46264 54.3 3.5e-84 308.9
Vvi6g975 . 9 272 HSF AT1G46264 50.8 3.8e-70 262.3
Vvi8g1462 . 16 113 HSF AT1G46264 70.4 3.5e-39 159.5
Vvi11g344 . 8 177 HSF AT3G24520 72.9 3.0e-64 242.7
Vvi1g517 . 7 238 HSF AT4G17750 50.2 4.0e-57 219.5
Vvi11g164 . 414 613 HSF AT4G17750 51.8 3.5e-53 206.5
Vvi4g88 . 22 194 HSF AT4G17750 57.6 3.3e-51 199.9
Vvi12g111 ECH 1 187 HSF AT4G17750 51.0 2.4e-46 183.7
Vvi10g260 ECH 7 146 HSF AT4G17750 57.6 6.7e-44 175.6
Vvi5g557 . 9 105 HSF AT4G17750 79.4 2.1e-42 170.6
Vvi16g112 . 1 86 HSF AT4G17750 87.2 2.0e-40 164.1
Vvi18g752 . 20 118 HSF AT4G17750 71.7 1.1e-38 158.3
Vvi2g380 . 20 115 HSF AT4G17750 70.8 1.0e-36 151.8
Vvi4g88 . 22 198 HSF AT5G16820 56.6 3.5e-50 196.4
Vvi11g164 . 415 613 HSF AT5G16820 51.7 6.7e-49 192.2
Vvi12g111 ECH 1 187 HSF AT5G16820 53.5 1.9e-48 190.7
Vvi10g260 ECH 9 146 HSF AT5G16820 55.0 6.3e-39 159.1
Vvi16g112 . 1 87 HSF AT5G16820 85.1 2.4e-38 157.1
Vvi5g557 . 10 102 HSF AT5G16820 77.4 9.0e-38 155.2
Vvi4g88 . 22 182 HSF AT1G32330 54.7 1.8e-46 184.1
Vvi10g260 ECH 7 146 HSF AT1G32330 59.6 3.4e-45 179.9
Vvi16g112 . 1 87 HSF AT1G32330 83.9 4.3e-40 162.9
Vvi5g557 . 4 102 HSF AT1G32330 75.8 5.7e-40 162.5
Vvi18g752 . 20 154 HSF AT1G32330 53.6 4.1e-38 156.4
Vvi8g1038 . 97 275 HSF AT3G02990 55.1 1.4e-51 201.1
Vvi12g111 ECH 1 200 HSF AT3G02990 50.7 7.7e-50 195.3
Vvi4g88 . 22 194 HSF AT3G02990 54.7 1.6e-47 187.6
Vvi5g557 . 10 120 HSF AT3G02990 70.3 1.1e-40 164.9
Vvi16g112 . 1 84 HSF AT3G02990 88.1 1.2e-39 161.4
Vvi10g260 ECH 9 146 HSF AT3G02990 53.2 1.0e-38 158.3
Vvi18g752 . 8 154 HSF AT3G02990 50.9 2.2e-36 150.6
Vvi4g88 . 21 284 HSF AT2G26150 53.3 2.0e-71 266.5
Vvi11g164 . 404 630 HSF AT2G26150 54.7 9.6e-66 247.7
Vvi10g260 ECH 7 146 HSF AT2G26150 57.9 6.7e-43 171.8
Vvi5g557 . 1 102 HSF AT2G26150 73.5 1.9e-42 170.2
Vvi10g260 ECH 7 109 HSF AT5G03720 62.1 2.5e-36 150.2
Vvi18g752 . 24 145 HSF AT4G18880 56.6 2.9e-37 153.3
Vvi10g260 ECH 11 110 HSF AT4G13980 76.0 1.7e-41 167.5
Vvi11g164 . 404 611 HSF AT3G22830 50.7 1.9e-57 220.3
Vvi4g88 . 19 205 HSF AT3G22830 53.3 1.8e-50 197.2
Vvi5g557 . 1 102 HSF AT3G22830 76.5 1.8e-42 170.6
Vvi10g260 ECH 9 147 HSF AT3G22830 52.4 2.2e-37 153.7
Vvi5g557 . 1 109 HSF AT3G51910 66.1 3.5e-39 159.1
Vvi11g164 . 405 601 HSF AT3G63350 50.3 4.6e-50 195.3
Vvi1g517 . 1 241 HSF AT1G67970 55.4 1.7e-68 256.9
Vvi11g164 . 409 613 HSF AT5G54070 52.1 6.4e-51 198.4
Vvi7g1074 . 2 287 HSF AT4G36990 52.6 1.5e-69 260.0
Vvi16g620 . 13 171 HSF AT4G36990 54.8 3.2e-43 172.6
Vvi7g1074 . 3 197 HSF AT5G62020 54.3 1.7e-42 170.2
Vvi18g752 . 17 117 HSF AT5G62020 66.3 6.6e-39 158.3
Vvi2g380 . 16 287 HSF AT4G11660 51.4 5.7e-72 268.5
Vvi18g752 . 16 119 HSF AT4G11660 76.0 9.2e-46 181.4
Vvi6g975 . 16 115 HSF AT4G11660 70.0 6.9e-41 165.2
Vvi7g1074 . 2 98 HSF AT4G11660 70.1 2.0e-40 163.7
Vvi8g1462 . 15 112 HSF AT4G11660 71.4 3.2e-38 156.4
Vvi8g1462 . 19 113 HSF AT2G41690 81.1 3.4e-41 165.6
Vvi18g752 . 1 279 HSF AT1G46264 54.3 3.5e-84 308.9
Vvi6g975 . 9 272 HSF AT1G46264 50.8 3.8e-70 262.3
Vvi8g1462 . 16 113 HSF AT1G46264 70.4 3.5e-39 159.5
Vvi11g344 . 8 177 HSF AT3G24520 72.9 3.0e-64 242.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004116 2 2 2 0 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14151 PF00447 HSF_DNA-bind 1.20E-31 CL0123 Vvi TF