Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g625 ATGGCTTCAATTGAGGAAATTAGAAACGCTCAACGTGCCAAGGGTCCGGCCACCATCCTAGCCATTGGCACAGCTACTCCCGACCACTGTGTCTACCAGTCTGATTATGCTGATTACTATTTCAGAGTCACTAAGAGCGAGCACATGACTGAGTTGAAGAAGAAGTTCAATCGCATATGTGACAAATCAATGATCAAGAAGCGTTACATTCATTTGACCGAAGAAATGCTTGAGGAGCACCCAAACATTGGTGCTTATATGGCTCCATCTCTTAACATACGTCAAGAGATTATCACTGCTGAGGTACCTAAACTTGGTAAAGAAGCAGCATTGAAGGCTCTTAAAGAGTGGGGTCAGCCAAAGTCCAAGATCACCCATCTTGTATTTTGTACAACCTCTGGTGTAGAAATGCCTGGTGCAGATTATAAACTCGCTAATCTCTTAGGCCTTGAAACATCGGTCAGAAGAGTGATGTTGTACCATCAAGGGTGCTATGCAGGTGGAACCGTCCTTCGAACCGCTAAGGATCTTGCAGAGAATAATGCAGGAGCACGAGTTCTTGTGGTGTGCTCTGAGATCACCGTTGTTACATTTCGAGGACCTTCCGAAGATGCTTTGGATTCTTTAGTTGGCCAAGCCCTTTTTGGCGATGGGTCAGCAGCTGTGATTGTTGGATCAGATCCAGATGTCTCGATTGAACGACCCCTCTTCCAGCTCGTCTCAGCAGCCCAAACATTTATTCCTAATTCAGCAGGTGCCATTGCGGGTAACTTACGTGAGGTGGGACTCACTTTTCACTTGTGGCCTAATGTGCCTACTTTGATTTCCGAGAACATAGAGAAATGCTTGACTCAAGCTTTTGATCCACTTGGTATTAGCGATTGGAACTCGTTATTTTGGATTGCTCACCCAGGTGGCCCTGCAATTCTTGATGCAGTTGAAGCAAAACTCAATTTAGATAAAAAGAAACTTGAAGCTACGAGGCATGTGCTAAGTGAGTATGGAAACATGTCAAGTGCATGTGTATTGTTTATTTTGGACGAGATGAGGAAGAAATCCCTTAAGGGGGAAAAGGCCACCACAGGTGAAGGATTGGATTGGGGAGTATTATTCGGTTTTGGGCCGGGCTTGACCATCGAGACTGTTGTGTTGCATAGCATTCCTATGGTTTCTAATTGA 1179 44.95 MASIEEIRNAQRAKGPATILAIGTATPDHCVYQSDYADYYFRVTKSEHMTELKKKFNRICDKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNIRQEIITAEVPKLGKEAALKALKEWGQPKSKITHLVFCTTSGVEMPGADYKLANLLGLETSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSEITVVTFRGPSEDALDSLVGQALFGDGSAAVIVGSDPDVSIERPLFQLVSAAQTFIPNSAGAIAGNLREVGLTFHLWPNVPTLISENIEKCLTQAFDPLGISDWNSLFWIAHPGGPAILDAVEAKLNLDKKKLEATRHVLSEYGNMSSACVLFILDEMRKKSLKGEKATTGEGLDWGVLFGFGPGLTIETVVLHSIPMVSN* 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 16268746 16270553 + Vvi16g625 Vvi16g625 778274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g625 392 PANTHER CHALCONE SYNTHASE 2 2 389 - -
Vvi16g625 392 PIRSF PKS_III 2 389 IPR011141 GO:0009058|GO:0016747
Vvi16g625 392 Gene3D - 236 392 IPR016039 GO:0016746
Vvi16g625 392 Gene3D - 1 235 IPR016039 GO:0016746
Vvi16g625 392 SUPERFAMILY Thiolase-like 235 388 IPR016039 GO:0016746
Vvi16g625 392 CDD CHS_like 16 384 - -
Vvi16g625 392 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Vvi16g625 392 SUPERFAMILY Thiolase-like 1 233 IPR016039 GO:0016746
Vvi16g625 392 Pfam Chalcone and stilbene synthases, C-terminal domain 238 388 IPR012328 -
Vvi16g625 392 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 2 389 IPR011141 GO:0009058|GO:0016747
Vvi16g625 392 Pfam Chalcone and stilbene synthases, N-terminal domain 5 228 IPR001099 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g625 K00660 CHS; chalcone synthase [EC:2.3.1.74] K13232 vvi:100264173 769.229
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g625 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000620 7 3 7 12 3 2 1 2 2 1 1 2 3 2 1 2 2 4 3 2 1 3 2 2 2 6 2 4 3 16 103