Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g65 ATGCAATTAGAATTCTTGTATAGTTTGTGCATGAATTGTACTTATATGTATCATTGGATTTCTTTGTTAAATATGGATGCAACGAACTGCCATGGAAGCAACAAGGTGGAGAGTTTCTGCGTGAGTGATCCGCTGAACTGGGGAATGGCTGCGGAGACGTTGAAGGGAAGCCATTTGGATGAAGTGAAGCGCATGGTGGCGGAGTACCGGAAGCCGGTTGTTCGGCTCGGTGGTGAGACGCTTACCATATCGCAGGTGGCGGCTATCGCCGGGCGGGAGGGGGATGTGAGTGTGGAGTTGTCGGAGACGGCGAGAGCGGGCGTGAACGCGAGCAGCGAGTGGGTGATGGAGAGCATGAGCAAAGGCACCGACAGCTATGGTGTCACCACTGGGTTTGGTGCTACTTCACATAGGAGAACCAAACAAGGTGGTGCCCTTCAGAAGGAGCTCATCAGGTTCTTGAATGCTGGGATATTTGGGAACGGAAGAGAGTCATGCCACACACTGCCTCACTCAACAACAAGAGCCGCCATGCTCGTGAGGATCAACACCCTCCTCCAAGGCTACTCCGGCATCAGATTTGAGATTCTGGAAGCAATCACCAAGCTCCTCAATCACAACATCACTCCATGCTTGCCTCTGCGTGGCACCGTCACTGCCTCCGGAGACCTGGTTCCTCTCTCCTACATCGCTGGTCTTCTCACCGGCAGGCCTAATTCCAAAGCTGTTGGACCTTCCGGTGAAGTTGTCAATGCCGAAGAGGCCTTTAAAATGGCTGGGATCGAGTCGGGATTTTTTGAGTTGCAGCCTAAGGAAGGCCTGGCTCTTGTTAATGGCACCGCAGTTGGCTCTGGCTTGGCCTCTATGGTGCTTTTTGAGACCAATGTGCTGGCAGTTTTGTCTGAACCGAAGCAAGATCGATATGCTCTCAGGACTTCACCTCAATGGCTTGGCCCACATATTGAAGTCATCCGAGCATCAACTAAATCCATCGAACGGGAGATCAACTCTGTGAATGATAACCCCTTGATCGATGTTTCCAGGAACAAGGCTCTACATGGTGGCAACTTCCAGGGGACCCCAATTGGAGTCTCCATGGACAACACCCGCTTGGCCATTGCAGCCATTGGGAAGCTTATGTTTGCCCAGTTCTCAGAGCTTGTCAATGACTTCTACAACAATGGACTGCCATCAAATCTCTCTGGAAGCCGAAACCCGAGTCTGGACTATGGTTTCAAGGGAGCAGAAATTGCCATGGCTTCCTACTGTTCAGAGCTCCAGTTCTTGGCCAATCCTGTCACCAACCATGTCGAAAGTGCTGAGCAACACAACCAAGATGTGAACTCCTTGGGCTTAATCTCCTCCCGGAAAACAGCTGAAGCGGTGGATATCTTGAAGCTCATGTCTACCACATACCTAGTGGCACTCTGCCAGGCCATTGATTTGAGGCATTTGGAGGAGAATTTGAAGAGCACGGTGAAGAAGACTGTAAGCCACGTAGCTAAGAAAACTCTAACCACTGGAGCCAATGGAGAACTCCACCCATCGAGATTCTGCGAGAAGGACTTGCTAAAAGTGGTGGATAGGGAACATGTATTTGCCTACATCGATGACCCCTGCAGCGCCACATATCCACTGATGCAGAAGGTGGGGTGGAGAGTGGAAACCCATCAATTCCGAACCGAATCAAGGAGTGCAGGTCATACCCATTGTACAAGTTTGTGTTTACTGCAATGTGTGAGGGGAAGATCATCGACCCTCTTCTGGATTGTCTCAGTGCTTGGAACGGTGCTCCTCTCCCAATCTGCTAGGGGATTTCACCCTTGCACATACTCTTTTACTTTACACTTCCAACTTTCTTTCATCTCTAAATTCTTATTTGTTTTTATTAGAATATCGCTTCTGCCTTTTAACTTACAATCTTTTTTCGTTTCTTTTCCAAGCACTATAAAAGTACCAAATACATTTTGTAATATCTACTTAAATATTACAATAGGTGTACCCTTCATCAATCCTTTCTTCCTTATTCAGAAGGATTGA 2040 48.53 MQLEFLYSLCMNCTYMYHWISLLNMDATNCHGSNKVESFCVSDPLNWGMAAETLKGSHLDEVKRMVAEYRKPVVRLGGETLTISQVAAIAGREGDVSVELSETARAGVNASSEWVMESMSKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGRESCHTLPHSTTRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTVTASGDLVPLSYIAGLLTGRPNSKAVGPSGEVVNAEEAFKMAGIESGFFELQPKEGLALVNGTAVGSGLASMVLFETNVLAVLSEPKQDRYALRTSPQWLGPHIEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGSRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVESAEQHNQDVNSLGLISSRKTAEAVDILKLMSTTYLVALCQAIDLRHLEENLKSTVKKTVSHVAKKTLTTGANGELHPSRFCEKDLLKVVDREHVFAYIDDPCSATYPLMQKVGWRVETHQFRTESRSAGHTHCTSLCLLQCVRGRSSTLFWIVSVLGTVLLSQSARGFHPCTYSFTLHFQLSFISKFLFVFIRISLLPFNLQSFFVSFPSTIKVPNTFCNIYLNITIGVPFINPFFLIQKD* 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 706774 713137 + Vvi16g65 Vvi16g65 777714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g65 679 Pfam Aromatic amino acid lyase 81 301 IPR001106 -
Vvi16g65 679 Pfam Aromatic amino acid lyase 303 495 IPR001106 -
Vvi16g65 679 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 300 559 - -
Vvi16g65 679 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 36 302 - -
Vvi16g65 679 Gene3D Fumarase/aspartase (Central domain) 281 542 - -
Vvi16g65 679 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 216 232 IPR022313 GO:0016841
Vvi16g65 679 Gene3D - 35 280 IPR024083 -
Vvi16g65 679 PANTHER HISTIDINE AMMONIA-LYASE 36 302 IPR001106 -
Vvi16g65 679 PANTHER HISTIDINE AMMONIA-LYASE 300 559 IPR001106 -
Vvi16g65 679 SUPERFAMILY L-aspartase-like 43 581 IPR008948 GO:0003824
Vvi16g65 679 CDD PAL-HAL 79 483 IPR001106 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g65 K10775 - pop:18100180 828.55