Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g652 ATGGAAGATGGTCAATCTGTTGTGAGGAAATGGGAGGACATGGACATCGATATTTTGGTGAAGATATTCCAATCGTTTGATATCTTTGAGTTGACATCGGGCATTGCTCATGTTTGTAGAGTTTGGCGCATGGCAGCTTGTGATCCTTTTCTTTGGAAAACGCTTGATTTAACGAAGTTGGAGTCCCACTTCATCAAAATCCCCTTAGAGCCATATGTTTATGTGTCTGATCAATCAGATAAGTCTTTGACGCGACTGTTAAAGATTTCATTAAATCTTAGCCAAGGGAACATTCGCTCGTTGATTTTTCATTTCAATCTATACCTGAATGATGATCAGTTAACTTATATTGCTGAAAGGTGCCCTCGACTCAGACGGCTTGTTCTGCCAGCTTGGAATCGAATAAAGAAGAGTGGGATATGCAAGGCTATTCGCATGTGGAAAGATCTCGAATCCCTGACAATGCCTAGCATAGAAAATCCCCCATACCTGATGGAGGAAATTTCTAAGAACTGCAATAACTTTAGAGAACTCAAAATCATGGGCCCTTGTCATGTTTTCTTTGCTAATACACTGGTAGCATTTCTTCCAAGATTAAAGATTCTAAGTCTTAGGTGCTCAGTGCTATTAAAGGAAGCTTTACTCAGTATCTTGGAAGGGTTGAAACACCTGGAAGTGCTTAACATATCACACTGCCTTCTCATAGACTCCCAGCGCATGAATGCCCAGCCACTTCCTCCAATGAAAAGAGTTATGAAGGAGCTTGATGAAAGCATTCTCAAGGCAGCTTCTAGATTACGTGAATTCTTAACATGCATGAACGACTCGTGCACTATGTGTGAACGGACGATCAATGATGAAGGGCTCATGAGGTGGTACAAGTATGAGGAAGGGCTATGGAAAACAGATGAGGCGACCTCTCTAGCTCTCTGA 933 41.8 MEDGQSVVRKWEDMDIDILVKIFQSFDIFELTSGIAHVCRVWRMAACDPFLWKTLDLTKLESHFIKIPLEPYVYVSDQSDKSLTRLLKISLNLSQGNIRSLIFHFNLYLNDDQLTYIAERCPRLRRLVLPAWNRIKKSGICKAIRMWKDLESLTMPSIENPPYLMEEISKNCNNFRELKIMGPCHVFFANTLVAFLPRLKILSLRCSVLLKEALLSILEGLKHLEVLNISHCLLIDSQRMNAQPLPPMKRVMKELDESILKAASRLREFLTCMNDSCTMCERTINDEGLMRWYKYEEGLWKTDEATSLAL* 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 16783411 16788434 + Vvi16g652 Vvi16g652 778301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g652 310 SUPERFAMILY RNI-like 97 235 - -
Vvi16g652 310 Gene3D Ribonuclease Inhibitor 57 289 IPR032675 -
Vvi16g652 310 Gene3D - 6 56 - -
Vvi16g652 310 PANTHER BNAANNG30020D PROTEIN 8 308 - -
Vvi16g652 310 PANTHER F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSED 8 308 - -
Vvi16g652 310 SUPERFAMILY F-box domain 10 60 IPR036047 GO:0005515
Vvi16g652 310 Pfam F-box-like 17 57 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g652 - - - vvi:100248117 630.557
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g652 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .