Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g655 ATGGTAGAAGTTGGGTATAGGTATAGATTCTTTGGTGAGGATGCTGAGATTGCAGCTAGGGTGTTGGGCATTTATGCTCATGTTGATCACAATTTCTTGACTGCTAGCATACCAACTTTTCGATTAAATGTCCATGTGAGGAGGCTTGTCAGTGCAGGGTTTAAGGTAGGTGTTGTTAAGCAGACCGAAACTGCAGCCATTAAGGCGCATGGTTCGAATAAACTGGGACCCTTTTGCCGGGGTTTATCGGCATTGTACACGAAGGCGACGTTGGAGGCAGCAGAGGAGGTGGGAGGTGGGGAAGAGGAATGTGGGTCTTATAATAATTACTTGGTTTGTGTAGTTGAGAAAGGGATTAGTGTAGAAAATAGTAAAGATTGTGGTGTTGGGGGTGGGTTTGATGTGAGAATTGGGATTGTTGCAGTTGAAGTATCAACGGGGGATGTTGTTCATGGGGAGTTCAATGATAATTTTATGAGGGCTGGGCTTGAGGCTGTGATTTTGAGCATGTCTCCTGCTGAATTGCTTCTTGGATACCCGCTCTCTAAACAAACAGAGAAGTTGCTATTAGCCTATGCTGGACCTGCATCAAATGTTCGTGTGGAGCGTACCTCAAGAGATTGCTTCAGTGATGGTGGAGCACTTGCTGAAGTTATGTCTTTATATGAGAACTTAAGTGAAAATAGTAGAGCTGATCATCAAGTGGACAACACAGAAGTGATGGAACAGGAAAATCATTGCCTGGCAATTGAGCCACCAACCACCTCTTATGTGAAATTTGTAAGTGTTCATTATGGTTCTGGTATAGCCTTGGGAATTATGAGCATGCCAGATTTGGCTGTTCAAGCACTGGCCTTAACCATTCGCCATTTGAAACAATTTGGTTTGGAAAGAATTCTGTGTATGGGAGCTTCGTTTCGGCCCTTTTCAAGCAACATGGAGATGACCCTTTCGGCGAATGCACTTCAACAATTAGAGGTTCTAAATAATCACTCTGATGGATCTGAGTCTGGCTCCTTGTTGCATACCATGAACCACACTCTTACCATATTTGGTTCGAGACTTCTTAGGCACTGGGTATCTCACCCTTTATGTGATAGCAACATGATATCTGCTCGTCTTGATGCTGTTTCTGAGATTGTGATGTCCATGGGTTCTTGCAAAGCATCGCAAAATTTTGGAAGGTCACCAGATATTCAACGTGGACTAACAAGAATTTTCCACCGGACAGCCACTGCATCTGAGTTCATTTCAGTCACGCAAGCTATTTTATTTGCTGGGAAACAACTTCAGCGACTTCACATTGAAGAGAAAGATGTTGATGAGAAGGGACAATCAAGGAGTGTGCGCTCTGTTTTGTTAAGAAAGTTGATTTTGACAGCTTCATCATCTGGTATAATTGGGAATGCTGCAAAACTATTGTCCACCCTAAACAAAGAAGCAGCTGATAAAGGGGATTTACCTAACTTATTCATTATTTCAAGTGGCCAATTCCCAGAGGTTGCTAAAGCAAGGTCACTGGTTCAATCAGCAAAGGAGAAATTGGATTTATTAATTGGATTGTATCGGAAGCAGCTTCGAATGAACAATTTGGAATTCATGAGTGTTTCTGGGACCACACATTTGATAGAGTTACCTGTAGATGTAAAGGTACCTTCAAATTGGGTGAAGGTAAATAGTACAAAAAAGACTGTTCGGTATCACCCCCCTGAGGTATTGAGTGCCCTAGATCAACTATCTCTGGCAAATGAGGAGCTCATGATTGCATGTAGAGGTGCTTGGGACAGTTTTCTAAGGGCATTTGATAAATATTTCTCTGAGTTCCAAGCTGCTGTCCAAGCTCTGGCTACTTTGGATTGTCTGCATTCACTTGCCATTCTGTCAAGAAATAAGAATTATGTACGTCCAGTTTTTGTTGGTGATAGTGAACCTGTTCAGATGCATATTTGTTCTGGTCGTCATCCGGTTTTGGAGACAGTATTACAAGACAATTTTGTCCCAAATGACACAAATTTGCATGCAGACGGAGAGTACTGTGAGATTGTTACTGGACCAAACATGGGTGGAAAGAGTTGCTATATTCGCCAAGTGGCTCTCATTGCTATCATGGCCCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAACTGTGTGTGTTAGATGGCATCCACACCCGAATGGGCTCCTCTGACAGTATCCAGCAAGGAAGGAGCACCTTTCTAGAAGAACTGAGCGAGGCATCTCACATAATCCACAATTGCACATCACGCTCATTGGTTATCATCGATGAACTGGGGAGAGGCACAAGTACACATGATGGTGTAGCAATTGCCTACGCTACATTGCATTATCTTCTGGAGCATAAGAGATGCATGGTCCTCTTTGTCACCCACTACCCTAAAATTAGAGCTATGGATATGGATACGGATACGGATAAAACAGACTCAAAATCTGATAAAAATGCTCAAACTATGGATCATGAGGATGTCACCTACCTTTATAAGCTTGTGCCTGGCGTTTCAGAGAGAAGTTTTGGGTTTAAGGTTGCACAGCTTGCACAGCTACCTTCTTCATGTATTCGCCGAGCCAACGTCATGGCTGCAGAATTGGAAGCAATGATTGTCAGCAGAGTGAAAAACAGTTCAGCACAAAAGACAAGATGCTTGCAGGGAGTTCTTTTTGGACTTGAAATCAGCATTGGGCAATGCTGA 2712 43.03 MVEVGYRYRFFGEDAEIAARVLGIYAHVDHNFLTASIPTFRLNVHVRRLVSAGFKVGVVKQTETAAIKAHGSNKLGPFCRGLSALYTKATLEAAEEVGGGEEECGSYNNYLVCVVEKGISVENSKDCGVGGGFDVRIGIVAVEVSTGDVVHGEFNDNFMRAGLEAVILSMSPAELLLGYPLSKQTEKLLLAYAGPASNVRVERTSRDCFSDGGALAEVMSLYENLSENSRADHQVDNTEVMEQENHCLAIEPPTTSYVKFVSVHYGSGIALGIMSMPDLAVQALALTIRHLKQFGLERILCMGASFRPFSSNMEMTLSANALQQLEVLNNHSDGSESGSLLHTMNHTLTIFGSRLLRHWVSHPLCDSNMISARLDAVSEIVMSMGSCKASQNFGRSPDIQRGLTRIFHRTATASEFISVTQAILFAGKQLQRLHIEEKDVDEKGQSRSVRSVLLRKLILTASSSGIIGNAAKLLSTLNKEAADKGDLPNLFIISSGQFPEVAKARSLVQSAKEKLDLLIGLYRKQLRMNNLEFMSVSGTTHLIELPVDVKVPSNWVKVNSTKKTVRYHPPEVLSALDQLSLANEELMIACRGAWDSFLRAFDKYFSEFQAAVQALATLDCLHSLAILSRNKNYVRPVFVGDSEPVQMHICSGRHPVLETVLQDNFVPNDTNLHADGEYCEIVTGPNMGGKSCYIRQVALIAIMAQVGSFVPASSAKLCVLDGIHTRMGSSDSIQQGRSTFLEELSEASHIIHNCTSRSLVIIDELGRGTSTHDGVAIAYATLHYLLEHKRCMVLFVTHYPKIRAMDMDTDTDKTDSKSDKNAQTMDHEDVTYLYKLVPGVSERSFGFKVAQLAQLPSSCIRRANVMAAELEAMIVSRVKNSSAQKTRCLQGVLFGLEISIGQC* 904
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 16825487 16834648 - Vvi16g655 Vvi16g655 778304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g655 903 PANTHER DNA MISMATCH REPAIR PROTEIN MSH3 1 887 - -
Vvi16g655 903 PIRSF Msh6 2 892 IPR017261 GO:0006298|GO:0030983
Vvi16g655 903 Pfam MutS domain I 1 93 IPR007695 GO:0005524|GO:0006298|GO:0030983
Vvi16g655 903 SMART mutATP5 677 868 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vvi16g655 903 Pfam MutS domain II 109 241 IPR007860 GO:0005524|GO:0006298|GO:0030983
Vvi16g655 903 ProSitePatterns DNA mismatch repair proteins mutS family signature. 758 774 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vvi16g655 903 SUPERFAMILY DNA repair protein MutS, domain I 2 90 IPR016151 GO:0005524|GO:0006298|GO:0030983
Vvi16g655 903 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 1 887 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Vvi16g655 903 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 633 871 IPR027417 -
Vvi16g655 903 SUPERFAMILY DNA repair protein MutS, domain III 319 631 IPR036187 -
Vvi16g655 903 Gene3D MutS, connector domain 105 314 IPR036678 GO:0005524|GO:0006298|GO:0030983
Vvi16g655 903 Gene3D - 633 892 IPR027417 -
Vvi16g655 903 SUPERFAMILY DNA repair protein MutS, domain II 107 189 IPR036678 GO:0005524|GO:0006298|GO:0030983
Vvi16g655 903 Gene3D - 317 625 - -
Vvi16g655 903 SMART DNAend 335 660 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vvi16g655 903 Gene3D DNA repair protein MutS, domain I 1 99 IPR016151 GO:0005524|GO:0006298|GO:0030983
Vvi16g655 903 Pfam MutS domain III 320 625 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vvi16g655 903 Gene3D - 475 601 - -
Vvi16g655 903 Pfam MutS domain V 681 871 IPR000432 GO:0005524|GO:0006298|GO:0030983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g655 K08736 MSH3; DNA mismatch repair protein MSH3 - vvi:100266933 1635.93
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g655 . . . . . . . . Cmo16g00135 . . . . . Sed08g0333 . . Bhi01g01330 Tan01g0263 Cmetu06g0071 . Hepe07g0166 Mch10g0163 . Cla01g00411 Cam01g0429 Cec01g0420 Cco01g0442 Clacu01g0430 Cmu01g0412 Cre09g2100 Cone1ag1153 Cone5ag0862 . . Lsi05g01236 . . Cme06g00988 . Blo09g00106 . . . . . . . . . Cma16g00130 . Car16g00115 . . . . . . . . . . Cla05g00871 Cam05g0960 Cec05g0964 Cco05g0964 Clacu05g0946 Cmu05g0903 Cre05g0987 . Csa03g01702 Chy06g00938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007018 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 2 1 36