Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g656 ATGAAAAACTTCTCAACGCAATTCAATCCTCAAAGCCCAGAAGTAGAAAACCCAAACATACAAGAAGAAAAGGCAGAACAACACATAGAAGAAGAAAGAGCTAGGTGCGACTGGGAATTCAATCTCTCCACTGTTGTTACCTCGAGCTCCACCGGAGCCAGCACTGACACCATCGGCGTCATAGAGTTCGACCCCTCTGATAACCTCGTGGCCACTGGAGGAATCGCTCGGAAAATTAGAGTTTATAGTCGCAAAGTTACATGGTTACAACATAATGATGCATGTGACTACTATGTATGTACCCCAGCCAAGCTCAGTAGCCTAAGGTGGAAACCTGGCTCCGCCGGCCGAGTACTAGGCTCTGGTGACTACGATGGGGTGGTCACCGAGTACGATCTCGACCAAAAAATCCCCATTTTCGAACGTGACGAGCACGGGACGGATGGCTGCTTAAGGCTTTGGAGTATGCATGACGCCCGAATGATTCGGGTGTACATGGGGCATATGAACACTCGGAGCTTTGTGGGGTTGTCAGTGTGGAGAACAGGCGGGTTACTGGGATGCGGGTCGGAAAATAACCATGTATTTGTGTACGACAAGAGGTGGGGTGAGCCCATATGGGTGCATGAATTTGGGGTCGGGAGTCGAGATGGGCGTGACCCGAATTTTGTGAGCAGTGTGTGTTGGAGGCAAGTGGGCGGTGAGGATGGGTGCACCCTTGGCCATTTGTTTTGGTTTCTATTTTTTTTTTTTGTTGGAATGCTAACAAAGTTTTTCCTTTGTGGATGTATTATACTTTACAAGTATTGGTGTTGCCTGTTCTGGTATTTGGCGTCTGCTACTAGTTGA 849 48.29 MKNFSTQFNPQSPEVENPNIQEEKAEQHIEEERARCDWEFNLSTVVTSSSTGASTDTIGVIEFDPSDNLVATGGIARKIRVYSRKVTWLQHNDACDYYVCTPAKLSSLRWKPGSAGRVLGSGDYDGVVTEYDLDQKIPIFERDEHGTDGCLRLWSMHDARMIRVYMGHMNTRSFVGLSVWRTGGLLGCGSENNHVFVYDKRWGEPIWVHEFGVGSRDGRDPNFVSSVCWRQVGGEDGCTLGHLFWFLFFFFVGMLTKFFLCGCIILYKYWCCLFWYLASATS* 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 16867340 16874670 + Vvi16g656 Vvi16g656 778305

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g656 282 PANTHER WD REPEAT-CONTAINING PROTEIN RUP1 146 240 IPR044616 -
Vvi16g656 282 PANTHER WD REPEAT-CONTAINING PROTEIN RUP1 1 146 IPR044616 -
Vvi16g656 282 SMART WD40_4 91 132 IPR001680 GO:0005515
Vvi16g656 282 SMART WD40_4 158 199 IPR001680 GO:0005515
Vvi16g656 282 SMART WD40_4 43 83 IPR001680 GO:0005515
Vvi16g656 282 Gene3D - 147 241 IPR015943 GO:0005515
Vvi16g656 282 Gene3D - 37 146 IPR015943 GO:0005515
Vvi16g656 282 MobiDBLite consensus disorder prediction 1 26 - -
Vvi16g656 282 MobiDBLite consensus disorder prediction 1 18 - -
Vvi16g656 282 SUPERFAMILY WD40 repeat-like 51 230 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g656 K10143 RFWD2, COP1; E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27] - vvi:100257557 262.692
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g656 . Blo15g00164 . . . Bpe07g00941 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda06g00679 Bda15g00733 . Bpe12g00423 Bma08g00337 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008150 3 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33