Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g659 ATGGTTAAGCTAACAATAGTTGGAAGGGTAAGCGATGGGCTTCCTCTAGCTCAAGGTCTTAGGTACCAAAATGATGAGGAGAATGAGAATTTCTTATGTTACAAGCAACAAGCAGAGTTCATCCTCAAAGAAATCTCAAGAGGAGCCTTGTCACCTTCAAAGATGACTATCCACATTGATCATTACCATTGTTTCAACTACTTGGTTGAGAATGGACATTGCTTCATCACATTATGCGATTCTTCATATCCAAGAAAACTAGCTTTCCACTATCTGCAAGATTTGCAAAAGGAGTTTGAGAAGTTTGATATTGGCCTCATGGAGAAAATTACAAAACCATACAGCTTTGTTAGATTTGATGGCATTATTGGGAATATTAGAAAGCAATATATAGATACAAGAACGCAGGCCAATCTGTCAAAGCTAAATGCTAATCGTGGACAAGATCTTGATATCATTGCAAAACACATGTCTGAAATCATACAAAAAGGACCAAAATCAGGTGAGTTCCATCTCCAATACTGGGTATGCTTCTGTTGA 540 37.59 MVKLTIVGRVSDGLPLAQGLRYQNDEENENFLCYKQQAEFILKEISRGALSPSKMTIHIDHYHCFNYLVENGHCFITLCDSSYPRKLAFHYLQDLQKEFEKFDIGLMEKITKPYSFVRFDGIIGNIRKQYIDTRTQANLSKLNANRGQDLDIIAKHMSEIIQKGPKSGEFHLQYWVCFC* 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 16909805 16910663 - Vvi16g659 Vvi16g659 778308

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g659 179 ProSiteProfiles Longin domain profile. 6 123 IPR010908 -
Vvi16g659 179 Gene3D Longin domain 1 131 - -
Vvi16g659 179 PANTHER VESICLE-TRAFFICKING PROTEIN SEC22B 1 167 IPR044565 GO:0005484|GO:0006888|GO:0006890
Vvi16g659 179 SUPERFAMILY SNARE-like 1 130 IPR011012 -
Vvi16g659 179 Pfam Regulated-SNARE-like domain 38 120 IPR010908 -
Vvi16g659 179 CDD Longin 5 130 IPR010908 -
Vvi16g659 179 PANTHER SNARE-LIKE SUPERFAMILY PROTEIN 1 167 - -
Vvi16g659 179 SMART Longin_2 37 122 IPR010908 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g659 K08517 SEC22; vesicle transport protein SEC22 - vvi:100264227 343.199
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g659 . . . . . . . . . Cmo18g01267 . . . . Sed13g0120 . . Bhi01g01324 Tan01g0257 Cmetu06g1462 . Hepe07g0162 Mch10g0159 . . . . . . . . . . . . . . . Cme06g00993 . . . . . . . . . . . . Cma18g01244 . Car18g01150 . . . . . . . . . Cla05g00877 Cam05g0965 . Cco05g0969 Clacu05g0953 Cmu05g0909 Cre05g0993 . Csa03g01707 Chy06g00943 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013964 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 24