Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g663 ATGTTTAAGTCAGCGAGATGGAGAAGCGAAAAGATCAAGATCAAAGCTGTATTCAAATTGCAGTTTCAGGCTACACAGGTGCCAGAGTCACGAGGAAATCTCTTGATGATATCTTTGATTCCAGAGGATGTTGGGAAGCCAACTGTGAGGTTGGAGAAAGCTGCAGTCAGGGAAGGAACCTGTACATGGGAAAATCCAATCTATGAAACGGTGAAGTTAATCAAGGAGAAGAAAACAGGGATAATCCATGAGAAAATTTACCGTTTCATTGTTTCAACTGGATCATCCAAAACAGGTATTCTGGGAGAAGCTTCAATTAACTTTGCAGACTATGAAGAGGCTACTGAACCGCTGACTGTGTCTCTGCCCCTTCAGACTCTTAACTCTGGTGCAATTTTACATGTCACAATCCAGAATATGCAAGGAGTTGCTAATCAAAGAGGTGTTGAAGAAAAAGGAAGTCAAGCAACTAAATCCCGACATAGGAGATCCCAGAGCCAAATTAATGGTGAAAACAAAAACTTCAGAGTAAATTGTGGCTCTTATGCTACATTAACTCCAACAGCACAAGATCTTGGATTGAAGAATGCTACTACTCATCGGAATCCAAACAGCCTTCTATCACCACTCAGACAGAGCTCCAGGCCTCAAGAGGGAACAATTGCTGCCACCACAAGAAAAGATCGTATGCATTGGAGATCAAATACAGATTTTTCTGTTGGTTCTGCTTCAGATGGCAGCATGATCGACTCGACAAACAGTGCAGAAGACAACTTTCCAGGAGGTTTCAAAGAGGATTCGGACAGTACTACTGAAAAACTCAAAAGTGAAAATTTTAACTTGTTGAGGCAAGCAGAATTATCAGAACTGGAATTGCAGTCTCTTCGGAAACAGATTGCGAAGGAGTGTAAAAGGGGACAAGATCTAACAAGAAAAAATGTTGGTCTAAAAGAGGAGAGAGATGCACTTAAAGAAGAATGTGAACAACTCAAATCCATGAAGAAATGTATCAATGATGAAGAACTCTCAGACAGGTTAACATTTGAGAGGGAAGCTTCAAGGGTCCTTCTGGAAGAAATGAGGAAAGAGCTGGACTATGAAAAGGATTTAAATAGGAATCTTCGGTTACAACTGCAGAAGACACAAGACTCAAACTCTGAGTTGATTATTGCTGTGAGAGACCTTGAGGAAATGTTGGAACCAAGGAATAAGGAAATATTTCAGCTTTTCGGTGATATAGAAAACAGAGAGAAAAGTGATGATCTGGTTGAGGAGCAAATCGATGCCAAGGAAGTTGGCGTCTTACAGAAAAAGATGACAGACCTGCACGGTGAAATAGAGGTGCACAGGAAAGATAGGGAAGAGCTAGAGATGCATATGGCACAGCTTGCATTGGACAATGAAGTTCTAAAACAGGAAAAGCAAAATATCTCAACTTTGGAGCAATACCAGAAGCAAGAACTAATGAAGATACAAAATGAACTCTCAGCTTCATTGGCTACCATTAAAGAACTTGAATCCCAGGTGGAGAGACTAGAGAAAGAAATCAAGAAGCAGGCACAAAAACTCTCAGAATCTTCCAATGCTGTTAATGAACTTCAGATGCAGGTTAAGAGCTTGGAGAAAGAATTGGAGAAGCAGGCACAGGGTTTTGAAGATGATTTGGAAGCCATGACACGTGCCAAAATTGAACAGGAACAGAGGGCTATCCGAGCAGAGGAGACCTTGAGAAAGACAAGGTGGAATAATGCTCAATCAGCTGAGAGGCTTCAAGAGGAATTTAGAAGGATTTCTGTGGAAATGACATCTAAGTTTGATGAGAATGAGAAGGTGGCCATGAAAGCAGTGACAGAAGCTAATGATTTGCGTGTGCAGAAAAGAATTCTGGAAGAGATGCTCCAGAAAGCCAATGAGGAGATTGGATTAATTAAAGATCAGTATGATGAGGGAGAAAAACATGAGGCTTCCTTTGCAGAGATCCAAATGCTCAGAGCTGAGATAGAAAGGATCACAAAAAAAGCAGAATTGGAAAGAAAATTTGCTTCGGTGATGAAGGAAGCAGAGAAAGTACAGGAGGATTTACATACAATGACTTGTATGAAGGATGACAATGAGACATTGATTGGGAGCTTGCAATCAGAACTAGACAACCTTAAACCTCAGTACAGTGAGTTGAAAAACCTCTTGTTTCAAGAAGTGCTAGAGAAGGAAAACCTCATGCAACAAGTATTTCAATTGAAGGGTGACCTAGAGAAGAAAGAAGAGGTTGTTGCTGTTACAGAGAATACAGGCAAGGATAACAATGGACAAGCTACATTATCAGATGGAACACAAGCGACTGCCACCACAATGGAACAACTCAATCATAGGACAACAATTTGTGAAGAACAATTTCAAAAGGAGGCCAGAGAAGCTGGGAATGTTACAGCGCTTGCTAGTCAGCATGAAGAAGGAGAAAATACAGGGGGAGATTTGTTAAATCCCGGGATGAAATCAATGGTATGCCTGTCAGTCCAAAATGAAATGGGCACAACATCAGTTCAAAGAAATGTAGAAACTTACTCAGAGAAAGAGATGACCGTCTCCATTTTCCATACCAATGATGAGAGCAATCTCACTGAATTGTTAGCTGAAGTGGCATTGCTTAAGGAAAGGAACAAATCCATGGAAGGGGAGCTTAAAGAAATGCGAGAGAGATATTCAGAGATAAGTCTCAAATTTGCAGAAGTTGAAGGTGAAAGGCAACAGCTTGTGATGACTGTACGGAACCTCAAGAATGGTAAGAAAAGCTAA 2793 40.82 MFKSARWRSEKIKIKAVFKLQFQATQVPESRGNLLMISLIPEDVGKPTVRLEKAAVREGTCTWENPIYETVKLIKEKKTGIIHEKIYRFIVSTGSSKTGILGEASINFADYEEATEPLTVSLPLQTLNSGAILHVTIQNMQGVANQRGVEEKGSQATKSRHRRSQSQINGENKNFRVNCGSYATLTPTAQDLGLKNATTHRNPNSLLSPLRQSSRPQEGTIAATTRKDRMHWRSNTDFSVGSASDGSMIDSTNSAEDNFPGGFKEDSDSTTEKLKSENFNLLRQAELSELELQSLRKQIAKECKRGQDLTRKNVGLKEERDALKEECEQLKSMKKCINDEELSDRLTFEREASRVLLEEMRKELDYEKDLNRNLRLQLQKTQDSNSELIIAVRDLEEMLEPRNKEIFQLFGDIENREKSDDLVEEQIDAKEVGVLQKKMTDLHGEIEVHRKDREELEMHMAQLALDNEVLKQEKQNISTLEQYQKQELMKIQNELSASLATIKELESQVERLEKEIKKQAQKLSESSNAVNELQMQVKSLEKELEKQAQGFEDDLEAMTRAKIEQEQRAIRAEETLRKTRWNNAQSAERLQEEFRRISVEMTSKFDENEKVAMKAVTEANDLRVQKRILEEMLQKANEEIGLIKDQYDEGEKHEASFAEIQMLRAEIERITKKAELERKFASVMKEAEKVQEDLHTMTCMKDDNETLIGSLQSELDNLKPQYSELKNLLFQEVLEKENLMQQVFQLKGDLEKKEEVVAVTENTGKDNNGQATLSDGTQATATTMEQLNHRTTICEEQFQKEAREAGNVTALASQHEEGENTGGDLLNPGMKSMVCLSVQNEMGTTSVQRNVETYSEKEMTVSIFHTNDESNLTELLAEVALLKERNKSMEGELKEMRERYSEISLKFAEVEGERQQLVMTVRNLKNGKKS* 931
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 16945005 16949623 + Vvi16g663 Vvi16g663 778312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g663 930 Coils Coil 872 913 - -
Vvi16g663 930 Coils Coil 446 473 - -
Vvi16g663 930 Coils Coil 619 646 - -
Vvi16g663 930 Coils Coil 357 398 - -
Vvi16g663 930 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 12 138 IPR019448 -
Vvi16g663 930 Coils Coil 673 693 - -
Vvi16g663 930 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 1 648 - -
Vvi16g663 930 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 648 929 - -
Vvi16g663 930 ProSiteProfiles C2 NT-type domain profile. 6 141 IPR019448 -
Vvi16g663 930 Coils Coil 736 756 - -
Vvi16g663 930 MobiDBLite consensus disorder prediction 195 221 - -
Vvi16g663 930 MobiDBLite consensus disorder prediction 195 270 - -
Vvi16g663 930 PANTHER BNAC08G20130D PROTEIN 648 929 - -
Vvi16g663 930 PANTHER BNAC08G20130D PROTEIN 1 648 - -
Vvi16g663 930 Coils Coil 306 340 - -
Vvi16g663 930 MobiDBLite consensus disorder prediction 145 173 - -
Vvi16g663 930 MobiDBLite consensus disorder prediction 235 258 - -
Vvi16g663 930 Coils Coil 488 575 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g663 - - - vvi:100248827 1650.57
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g345 Vvi16g663 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g663 Blo06g01120 . . . . . . . . . Cma02g01064 . Car02g00807 . . Cpe05g00655 . . . . . . . . Cla01g00281 Cam01g0291 Cec01g0284 Cco01g0297 Clacu01g0290 Cmu01g0277 Cre09g2230 . . Cone14ag0089 Cone15ag0095 . Csa05g00299 Chy09g01206 . . . . Bda15g00731 . Bpe12g00427 . . . Cmo02g01081 Cmo15g01279 . . . . . Cpe13g00164 Bhi12g00227 . . Lac11g2114 Hepe06g1563 . Lcy12g1671 . . . . . . . . . . Cme09g01743
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007478 1 1 1 0 1 1 4 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36