Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g666 ATGATTCTTACAATGAATTCTATTGCTCTATTTGGCCCAAGATTGTTTCGGATATTTCCCTGTTTTTGCCGTTCTTCTCGGTCATTTTCCACTAAGAACTCTGACGGCGGCGAAATGGATGATGGATTCATGAGGGTAAAGAATGGCGGCGAAATGGATGATAAATTCATGAGGATAGAGAATGGGGGCGAAATGGATGATGGATTCATGAGGATAGAGAAACCATTGAGTGAAGCTTGGGGGGTTTCTAATTTTGATCCTGTTTCAGATGAAAACCCTGATTCAGATAATGGCATTGGAAGCTCTTCCCCTGCTGAATTCTTGGCGGGGAAAGGTTATTTTGACAATATGAGGCTTGATGCTAGTAGGGTTCTTCAAATTCTTCAACAAGATTGCCCGGGATTCAGTACAAAAGCAGCTCTCGATGAGTTGCAAATAAGGGTTTCAGGTGGTCTTGTGAGAGAAGTTCTGTTAGAGATATTGAAAACAGTGAATTACACAAATAAGGAACGGTGTGCCAAATTGGGGTACAAGTTCTTCATGTGGTCTGGTCAGCAGGAAAATTATAGGCATACTGTGAATGCATACCATCTGATAATGAAGATTTTTGCAGAATCTGATGAGTTTAAAGCCATGTGGAGATTGGTTGATGAGATGATTGAGCAAGGGTTTCCAGTTACAGCGAGAACATTCCAGATTTTGATATGTACTTGTGGTGAGGCGGGATTGGCAAGGAGAGCTGTGGAGAGGTTTGTAAAGTCGAAAAATTTTAATTATAGGCCATTTAAGCATTCATATAATGCAATTCTACATTGCCTTCTTTGTTTAAAGCAGTACAAATTGGTAGAATGGGTTTATCAACAGATGTTACTTGAGGATTATTCTCCTGATATTTTAACTTATAACATAGTTATGTGTACAAAATATAGGTTGGGGAAATTGGATCAATTCCATAGATTGCTTGAAGAATTGGGTACAAATGGGTTTTCCCCAGATTTTCATACATTTAATATCCTTCTTCATCTTCTTGGAAAAGGGAACAAGCCACTTGCAGCACTTGATCTTTTGAATCATATGAAAGAAGTTGGTTTTGATCCAAGCGTTCTTCACTTCACCACATTGATAGATGGACTGAGTCGGGCTGGGAACTTGGATGCCTGCAAGTATTTTTTTGATGAGATGATTAAGCTTGGATGTATGCCTGATGTTGTTTGCTATACTGTTATGATCACAGGATATATTGTGGCTGGGGAACTTGAGATGGCTCAGGGATTGTTTGAAGAGATGACTGTGAAAGGACAATTACCAAATGTATTTACGTACAATTCTATGATCCGTGGGCTATGTATGGCAGAGAAGTTTGAGGAGGCACGCTCCATGCTTAAAGAAATGGAATCTAGAGGTTGTAATCCGAATTTTCTTGTGTACAATACCCTAGTTGGTAATCTGCGAAATGCTGGAAAGCTTAAAGAGGCTCATGAAGTAATAAGACATATGGTGGATAAGGGTCAATATGTCCATCTGCTTTCAAAATTCAAGGGATATAGGAGATGCTAA 1557 39.31 MILTMNSIALFGPRLFRIFPCFCRSSRSFSTKNSDGGEMDDGFMRVKNGGEMDDKFMRIENGGEMDDGFMRIEKPLSEAWGVSNFDPVSDENPDSDNGIGSSSPAEFLAGKGYFDNMRLDASRVLQILQQDCPGFSTKAALDELQIRVSGGLVREVLLEILKTVNYTNKERCAKLGYKFFMWSGQQENYRHTVNAYHLIMKIFAESDEFKAMWRLVDEMIEQGFPVTARTFQILICTCGEAGLARRAVERFVKSKNFNYRPFKHSYNAILHCLLCLKQYKLVEWVYQQMLLEDYSPDILTYNIVMCTKYRLGKLDQFHRLLEELGTNGFSPDFHTFNILLHLLGKGNKPLAALDLLNHMKEVGFDPSVLHFTTLIDGLSRAGNLDACKYFFDEMIKLGCMPDVVCYTVMITGYIVAGELEMAQGLFEEMTVKGQLPNVFTYNSMIRGLCMAEKFEEARSMLKEMESRGCNPNFLVYNTLVGNLRNAGKLKEAHEVIRHMVDKGQYVHLLSKFKGYRRC* 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 16971498 16973459 + Vvi16g666 Vvi16g666 778315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g666 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 506 IPR002885 -
Vvi16g666 518 PANTHER OS10G0506000 PROTEIN 5 518 - -
Vvi16g666 518 Pfam Pentatricopeptide repeat domain 265 305 IPR002885 -
Vvi16g666 518 Pfam Pentatricopeptide repeat domain 460 502 IPR002885 -
Vvi16g666 518 Pfam PPR repeat family 401 449 IPR002885 -
Vvi16g666 518 Pfam PPR repeat family 331 379 IPR002885 -
Vvi16g666 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Vvi16g666 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Vvi16g666 518 Gene3D Tetratricopeptide repeat domain 432 514 IPR011990 GO:0005515
Vvi16g666 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Vvi16g666 518 Gene3D Tetratricopeptide repeat domain 359 431 IPR011990 GO:0005515
Vvi16g666 518 Gene3D Tetratricopeptide repeat domain 291 358 IPR011990 GO:0005515
Vvi16g666 518 Gene3D Tetratricopeptide repeat domain 126 290 IPR011990 GO:0005515
Vvi16g666 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Vvi16g666 518 TIGRFAM PPR: pentatricopeptide repeat domain 404 438 IPR002885 -
Vvi16g666 518 TIGRFAM PPR: pentatricopeptide repeat domain 371 403 IPR002885 -
Vvi16g666 518 TIGRFAM PPR: pentatricopeptide repeat domain 475 503 IPR002885 -
Vvi16g666 518 TIGRFAM PPR: pentatricopeptide repeat domain 439 472 IPR002885 -
Vvi16g666 518 TIGRFAM PPR: pentatricopeptide repeat domain 334 367 IPR002885 -
Vvi16g666 518 TIGRFAM PPR: pentatricopeptide repeat domain 195 227 IPR002885 -
Vvi16g666 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Vvi16g666 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Vvi16g666 518 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 5 518 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g666 - - - vvi:100255723 1053.51
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g666 . . Bda05g00073 . Bpe03g00288 . Bma10g01222 . Cmo16g00134 Cmo18g01269 . . . . Sed07g1105 . Cpe14g00109 Bhi01g01321 Tan01g0253 Cmetu06g1773 . Hepe07g0160 Mch10g0155 . . . . . . . . . . Cone14ag0088 Cone15ag0092 Lsi05g01227 . . . Blo07g00412 . . . . . . . . . . . Cma18g01246 Car16g00114 Car18g01152 Cpe09g00092 . . . . . . . . Cla05g00880 Cam05g0968 Cec05g0972 Cco05g0972 . Cmu05g0912 Cre05g0996 . Csa03g01710 Chy06g00946 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006768 1 1 1 1 1 1 2 1 1 1 1 0 2 0 1 2 1 2 2 1 1 1 1 2 2 2 1 1 1 1 36