Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g672 ATGAGAAAATTGAAAGCAATTCTAGGTGTTCTCTTGCTTTGGTTTCTGTGCTCAACAATTTTAAGGTCATGCAGGGCAAACAACTTGGTTTGTAATGAAAAGGAGAAACAAGCCCTTCTGAGCTTCAAACACGCTCTTCTTCACCCTGCAAACCAGCTGTCTTCTTGGTCTATTAAAGAAGACTGTTGTGGATGGCGAGGAGTCCACTGTAGCAATGTGACTGCTCGAGTTCTCAAGCTCGAACTGGCTGATATGAATTTGGGAGTCCTTGATCTTTCTGAGAACAAAATCAATCAAGAAATGCCAAATTGGTTGTTTAATCTCAGTAGTCTTGCTTCTTTAAGTCTATCAGATAATCAATTCAAGGGGCAAATTCCAGAGTCCTTGGGGCACTTCAAATATCTAGAATATCTTGATCTTTCTTCTAATTCCTTTCATGGCCCTATTCCTACATCCATAGGAAACTTATCCTCCTTGAGGGAATTAAATCTTTATTATAATCGGTTAAATGGTACTCTTCCTACGAGTATGGGGCGTCTTTCAAATTTGATGGCCTTGGCTCTGGGACATGACTCCTTGACCGGTGCTATATCAGAAGCACATTTTACAACACTTTCAAACTTGAAGACAGTACAGATATCAGAGACATCCTTATTTTTCAATATGAATGGAACAAGTCAATTGGAGGTCCTTGACATATCAATTAATGCTTTATCCGGGGAAATTTCTGATTGTTGGATGCATTGGCAATCTCTTACTCATATAAATATGGGAAGCAACAATCTATCTGGTAAAATCCCCAATTCCATGGGTTCTTTGGTTGGACTTAAAGCATTGAGCTTGCACAACAATTCCTTCTATGGAGATGTACCTTCATCACTAGAGAACTGCAAGGTTTTGGGGCTGATAAATCTAAGTGACAATAAATTTTCGGGGATTATACCCAGGTGGATTGTTGAGAGGACAACTGTAATGGTTATCCATTTAAGAACCAATAAATTCAACGGCATTATTCCTCCACAAATATGTCAACTTTCTTCTCTTATAGTATTGGATTTAGCTGATAATAGTCTATCAGGAGAGATACCGAAGTGCTTGAATAATTTCAGTGCTATGGCTGAAGGACCTATCCGGGGTCAGTATGATATTTTGTATGATGCTTTGGAAGCAGAGTATGATTATGAATCTTACATGGAAAGTCTTGTTTTAGATATAAAGGGGAGGGAATCAGAGTATAAAGAGATTCTTAAATATGTTAGGGCCATCGACCTTTCAAGTAACAATTTATCAGGATCAATCCCAGTTGAAATCTTTAGTCTCTCCGGATTGCAACTTCTAAACTTATCTTGCAATCATTTAAGGGGAATGATATCAGCGAAAATTGGAGGCATGGAATACTTAGAATCTTTGGATCTCTCTAGAAACCATCTTTCAGGTGAAATTCCTCAAAGCATTGCCAATTTAACATTTCTTAGTTATCTGAACGTGTCGTACAACAAATTTTCTGGAAAAATTCCTTCAAGTACCCAGCTTCAAAGCTTGGATCCACTTTATTTCTTTGGCAATGCTGAACTGTGTGGAGCTCCTCTTTCGAAAAATTGCACAAAAGATGAAGAGCCTCAAGATACAAACACCAATGAAGAAAGTGGAGAACATCCTGAAATCGCATGGTTTTACATTGGCATGGGAACAGGATTTGTTGTGGGGTTCTGGGGAGTTTGTGGAGCTCTCTTTTTCAAAAGATCTTGGAGGCATGCTTATTTTCGGGTTCTTGATGACATGAAAGACAGGGTCTATGTGGTTATAGCATTAAGATTTACGATGTTTAAGGGGTCGCAGCGAAAGAGAGAAGGTAATGGATGGTGGTGGAACTTGAAGAAACTGGGGAAAACATTCCAGGGAGCACATAACCTCATCAAGGTGACATGTTTCCACAACTTCAGCACTGAGACGCCTCAAGATTTTGCTCTCAAGTCTGCAGCATTTAGAATTGCTCTTCTAATTATCAACTTGGTGGTGTTGTTATGGATATTATACTTTATTCTATGTTATTTGCTGTTATGTACGTTATACTAG 2076 38.73 MRKLKAILGVLLLWFLCSTILRSCRANNLVCNEKEKQALLSFKHALLHPANQLSSWSIKEDCCGWRGVHCSNVTARVLKLELADMNLGVLDLSENKINQEMPNWLFNLSSLASLSLSDNQFKGQIPESLGHFKYLEYLDLSSNSFHGPIPTSIGNLSSLRELNLYYNRLNGTLPTSMGRLSNLMALALGHDSLTGAISEAHFTTLSNLKTVQISETSLFFNMNGTSQLEVLDISINALSGEISDCWMHWQSLTHINMGSNNLSGKIPNSMGSLVGLKALSLHNNSFYGDVPSSLENCKVLGLINLSDNKFSGIIPRWIVERTTVMVIHLRTNKFNGIIPPQICQLSSLIVLDLADNSLSGEIPKCLNNFSAMAEGPIRGQYDILYDALEAEYDYESYMESLVLDIKGRESEYKEILKYVRAIDLSSNNLSGSIPVEIFSLSGLQLLNLSCNHLRGMISAKIGGMEYLESLDLSRNHLSGEIPQSIANLTFLSYLNVSYNKFSGKIPSSTQLQSLDPLYFFGNAELCGAPLSKNCTKDEEPQDTNTNEESGEHPEIAWFYIGMGTGFVVGFWGVCGALFFKRSWRHAYFRVLDDMKDRVYVVIALRFTMFKGSQRKREGNGWWWNLKKLGKTFQGAHNLIKVTCFHNFSTETPQDFALKSAAFRIALLIINLVVLLWILYFILCYLLLCTLY* 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 17017498 17020870 + Vvi16g672 Vvi16g672 778321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g672 691 Gene3D Ribonuclease Inhibitor 29 220 IPR032675 -
Vvi16g672 691 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED 89 171 - -
Vvi16g672 691 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED 162 598 - -
Vvi16g672 691 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED 11 84 - -
Vvi16g672 691 Pfam Leucine rich repeat 111 169 IPR001611 GO:0005515
Vvi16g672 691 Pfam Leucine rich repeat 227 285 IPR001611 GO:0005515
Vvi16g672 691 Pfam Leucine rich repeat 419 477 IPR001611 GO:0005515
Vvi16g672 691 SUPERFAMILY L domain-like 54 370 - -
Vvi16g672 691 Gene3D Ribonuclease Inhibitor 221 543 IPR032675 -
Vvi16g672 691 SMART LRR_typ_2 464 492 IPR003591 -
Vvi16g672 691 SMART LRR_typ_2 273 297 IPR003591 -
Vvi16g672 691 SMART LRR_typ_2 345 369 IPR003591 -
Vvi16g672 691 SMART LRR_typ_2 416 440 IPR003591 -
Vvi16g672 691 SMART LRR_typ_2 108 132 IPR003591 -
Vvi16g672 691 SMART LRR_typ_2 156 180 IPR003591 -
Vvi16g672 691 SUPERFAMILY L domain-like 413 529 - -
Vvi16g672 691 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g672 - - - vvi:100257448 792.341
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g672 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01009 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000631 0 9 0 0 0 3 1 3 2 3 2 1 1 1 2 1 1 9 1 0 2 3 3 8 11 1 2 4 3 9 86