Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g673 ATGGTACTCAAAGACTTTCGAGATCAGTTGATTGACTTTATTTTGTACGAGGCAGGAATTGTGGACACAGCTCCAAAGTGGTTCTGGAAGTGGGCTTCACATCTTCAAACTATCAATCTTGATCATAACCAGATAAGTGGAGATTTATCCCAAGTTCTGCTAAATAGTACTATCTTCTCTATAAATTCTAATTGCTTCACGGGTCAATTACCACATTTGTCACCAAATGTTGTTGCGTTGCGTATGTCCAATAATTCATTATCCGGACAGATTTCCTCTTTCTTGTGCCAAAAGATGAATGGAAGAAGCAAACTGGAGATACTCTACATACCATATAACGCTTTGTCAGGGGAACTTCCTCATTGTTTGCTGCACTGGCAATCTTTGACTCATTTAAACTTGGGAAGCAACAATCTATCAGGTAAAATTCCTGAATTGATTGGCTCTTTATTTTCTCTCAAGGCATTGCATTTGCACAATAATAGCTTTTCAGGAGGTATACCATTGTCACTCAGAAACTGCACATTTTTGGGCCTCATAGATTTTGCTGGAAATAAACTTACCGGAAACATACCTAGCTGGATAGGAGAAAGAACACATCTAATGGTTCTACGGTTAAGATCCAATGAATTCTTTGGGGATATTCCTCCACAGATATGCCGACTTTCTTCTCTTATAGTATTGGATCTTGCTGATAACAGGTTATCTGGATTCATACCGAAGTGCTTGAAAAATATCAGTGCAATGGCTACAAGTCCCAGTCCAATTGATGATAAATTTAATGCTTTAAAATATCATATAATTTACATTCGATACACAGAGAATATTTTGTTGGTCATTAAAGGCAGGGAATCAAGATACGGTAGTATCCTTCCATTAGTGAGGATAGTCGACCTTTCAAGTAACAATTTGTCAGGAGGAATCCCTTCTGAAATCTATAGTCTTTTTGGATTGCAGTCTTTGAACTTGTCTCGAAATAATTTAATGGGAAGGATGCCAGAGAAAATCGGGGTTATTGGATATTTAGAGTCTCTAGATCTCTCGAACAACCATCTTTCGGGTGAAATTCCTCAAAGCATCATTAATTTGACATTTCTTAGTCACTTGGACTTGTCATACAACAATTTCTCTGGAAGAATTCCTTCAAGCACACAGCTTCAGAGCTTTGATGCTCTTGATTTCATTGGCAACCCTGAACTTTGTGGAGCTCCTCTCTTGAAAAACTGCACAGAGAATGAAAATCCGAATCCCAGTGATGAAAATGGAGACGGCTTCGAAAGATCATGGTTTTATATTGGTATGGGAACTGGATTCATAGTGAGCTTTTGGGGAGTCTGTGGTGCTCTTCTATGCAAGAGAGCTTGGAGGCATGCTTACTTCAAGTTCCTTGACAACATCAAAGACCGGGTTTATTTGGCGACAGTGCTAAAACTGAGCTGGCTCCGCTACCATTTCAGAAGATACCGCATCAGTTTGAGATGTCCAAGGAGCTGCAAACAGGAAAGAATGGAGGAAAGAGGTAGTGGTGAATCTTAA 1536 39.26 MVLKDFRDQLIDFILYEAGIVDTAPKWFWKWASHLQTINLDHNQISGDLSQVLLNSTIFSINSNCFTGQLPHLSPNVVALRMSNNSLSGQISSFLCQKMNGRSKLEILYIPYNALSGELPHCLLHWQSLTHLNLGSNNLSGKIPELIGSLFSLKALHLHNNSFSGGIPLSLRNCTFLGLIDFAGNKLTGNIPSWIGERTHLMVLRLRSNEFFGDIPPQICRLSSLIVLDLADNRLSGFIPKCLKNISAMATSPSPIDDKFNALKYHIIYIRYTENILLVIKGRESRYGSILPLVRIVDLSSNNLSGGIPSEIYSLFGLQSLNLSRNNLMGRMPEKIGVIGYLESLDLSNNHLSGEIPQSIINLTFLSHLDLSYNNFSGRIPSSTQLQSFDALDFIGNPELCGAPLLKNCTENENPNPSDENGDGFERSWFYIGMGTGFIVSFWGVCGALLCKRAWRHAYFKFLDNIKDRVYLATVLKLSWLRYHFRRYRISLRCPRSCKQERMEERGSGES* 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 17021166 17025232 + Vvi16g673 Vvi16g673 778322

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g673 511 SUPERFAMILY L domain-like 14 96 - -
Vvi16g673 511 PANTHER LRR RECEPTOR-LIKE KINASE 17 477 - -
Vvi16g673 511 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 17 477 - -
Vvi16g673 511 PRINTS Leucine-rich repeat signature 342 355 - -
Vvi16g673 511 PRINTS Leucine-rich repeat signature 363 376 - -
Vvi16g673 511 Gene3D Ribonuclease Inhibitor 3 413 IPR032675 -
Vvi16g673 511 Pfam Leucine Rich Repeat 366 383 IPR001611 GO:0005515
Vvi16g673 511 Pfam Leucine Rich Repeat 342 363 IPR001611 GO:0005515
Vvi16g673 511 Pfam Leucine Rich Repeat 224 245 IPR001611 GO:0005515
Vvi16g673 511 Pfam Leucine Rich Repeat 128 150 IPR001611 GO:0005515
Vvi16g673 511 ProSiteProfiles Leucine-rich repeat profile. 128 150 IPR001611 GO:0005515
Vvi16g673 511 SUPERFAMILY L domain-like 67 406 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g673 - - - vvi:104882202 984.941
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g673 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00532 Chy09g01010 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018033 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 6