Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g677 ATGGTGAGCCAAAGGCAAAGGCTTGCTCGCCAAATCTACAAAAAGGCGCACCCGGAACTGTTCCCAAAAGCCGAGCCAGCAGCCCCCAAAGACCCAACCAAGAAGAAGAAAAAGAAGAGCAAGTTGAAGCCCAAGAGAGCAGAGATGAAAGGACCCAAGTCCACAGAGAAATCAGATAAATCAAAGCTTAGAAAACACCCACTTAGAGTTCCAGGCATGAAACCTGGCGAGAGCTGTTTCATCTGCAAAGCTAAAGACCATATCGCCAAACATTGCCCCGAGAAAGCTCAGTGGGAAAGGCACAAGATATGTTTGCTTTGTCGACAACGTGGACACAGTCTCAAGAACTGCCCTGATAAGGGTGAGGAAAAGTTGGATAAAAAATTGTGTTATAACTGTGGGGAAACAGGGCACTCACTTGCTAATTGCCCCCAACCTCTTCAAGAAGGGGGAACGAAATTTGCCAGTTGCTTTATTTGTAATGAGCGTGGACATTTGAGTAAGAACTGCCCCAAAAATTCTCATGGGATCTATCCAAAGGGCGGTTGTTGTAAAATATGTGGTGGGGTTACACATTTGGCCAAAGATTGTCCTAACAAAGGCTGCAACAACAGTCCAGTTGCTGCAATTGCTGGAGGTATTAAACATGAAGAGAGGCCAAAGGTAACCAAGTTTGTGAGTGGAGACGATCTTGATGATGACTTTATGGTAGCTGACACATATACTGGCTATAAAGAGAAGTCTTCTGAGGCAAAAGTTCATCCAACTCCTGAGTCGAAAAACAGTCATGTAAAACCAAAAAAGAAGCAAGGTCCTAACGTTGTGAATTTTGTAGGATGA 840 44.4 MVSQRQRLARQIYKKAHPELFPKAEPAAPKDPTKKKKKKSKLKPKRAEMKGPKSTEKSDKSKLRKHPLRVPGMKPGESCFICKAKDHIAKHCPEKAQWERHKICLLCRQRGHSLKNCPDKGEEKLDKKLCYNCGETGHSLANCPQPLQEGGTKFASCFICNERGHLSKNCPKNSHGIYPKGGCCKICGGVTHLAKDCPNKGCNNSPVAAIAGGIKHEERPKVTKFVSGDDLDDDFMVADTYTGYKEKSSEAKVHPTPESKNSHVKPKKKQGPNVVNFVG* 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 17036900 17041425 - Vvi16g677 Vvi16g677 778326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g677 279 ProSiteProfiles Zinc finger CCHC-type profile. 157 172 IPR001878 GO:0003676|GO:0008270
Vvi16g677 279 PANTHER OS04G0555800 PROTEIN 1 278 - -
Vvi16g677 279 Pfam Zinc knuckle 183 198 IPR025836 -
Vvi16g677 279 Pfam Zinc knuckle 102 118 IPR025836 -
Vvi16g677 279 SUPERFAMILY Retrovirus zinc finger-like domains 72 120 IPR036875 GO:0003676|GO:0008270
Vvi16g677 279 MobiDBLite consensus disorder prediction 1 70 - -
Vvi16g677 279 SUPERFAMILY Retrovirus zinc finger-like domains 124 173 IPR036875 GO:0003676|GO:0008270
Vvi16g677 279 Gene3D - 153 202 - -
Vvi16g677 279 ProSiteProfiles Zinc finger CCHC-type profile. 130 145 IPR001878 GO:0003676|GO:0008270
Vvi16g677 279 MobiDBLite consensus disorder prediction 245 265 - -
Vvi16g677 279 Gene3D - 124 152 - -
Vvi16g677 279 SMART c2hcfinal6 103 119 IPR001878 GO:0003676|GO:0008270
Vvi16g677 279 SMART c2hcfinal6 156 172 IPR001878 GO:0003676|GO:0008270
Vvi16g677 279 SMART c2hcfinal6 183 199 IPR001878 GO:0003676|GO:0008270
Vvi16g677 279 SMART c2hcfinal6 129 145 IPR001878 GO:0003676|GO:0008270
Vvi16g677 279 SMART c2hcfinal6 78 94 IPR001878 GO:0003676|GO:0008270
Vvi16g677 279 Gene3D - 72 123 - -
Vvi16g677 279 MobiDBLite consensus disorder prediction 47 66 - -
Vvi16g677 279 Pfam Zinc knuckle 157 172 IPR001878 GO:0003676|GO:0008270
Vvi16g677 279 Pfam Zinc knuckle 129 145 IPR001878 GO:0003676|GO:0008270
Vvi16g677 279 MobiDBLite consensus disorder prediction 245 279 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g677 - - K05765 vvi:100242054 561.222
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g677 . . Bda05g00075 . Bpe03g00286 . . . . Cmo18g01271 . . . . Sed01g3584 . Cpe14g00107 Bhi01g01319 Tan01g0250 Cmetu06g0041 . Hepe07g0157 Mch10g0153 . . . . . . . . Cone1ag1157 Cone5ag0868 . . Lsi05g01224 . . Cme06g01001 Blo07g00410 . . . . . . . . . . Cma16g00124 Cma18g01248 Car16g00113 Car18g01155 Cpe09g00089 . . . . . . . . . . . . . . . . Csa03g01713 Chy06g00948 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010880 1 1 1 0 1 1 2 1 1 0 0 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 31