Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g679 ATGAGAAACTCCAGACCCATCATTTTGTTTCCCTTGCTTTGCTTTCTCTCCTCCACCATCTCAATCTTATGTGACCCAAACACTTTGGTTTGCAATGAAAAAGAGAAACATGCCCTTCTAAGATTCAAGAAAGCTCTCTCTAATCCTGGCAACCGGCTCTCATCTTGGTCTGTCAATCAAGATTGTTGTAGATGGGAAGCAGTTCGCTGCAACAACGTTACAGGGCGAGTGGTTGAGCTCCATCTCGGTAATCCATATGACGCGGATGATTATGAATTCTATAGATTGGGTGGTGAAATTAGCCCTGCTTTGCTTGAATTAGAATTTTTGAGTTACTTGAACTTGAGTTGGAATGATTTTGGAGGTAGTCCAATTCCAAGTTTCCTGGGTTCCATGGGGAGTTTGAGATATCTTGACCTCACCTCTGTTGGATTTGGTGGACTAGTCCCTCATCAGCTTGGAAATCTCTCGACTCTTCGTCACCTGGATCTGGGATATAACAATGGGTTGTACGTTGAGAATCTTGGTTGGATTTCTCATCTTGCTTTTTTGAAGTACCTAGGCATGAATGGGGTTGACCTTCACAGGGAAGTCCATTGGCTTGAATCCGTGTCTATGTTCCCTTCTCTTTCAGAGCTGCACTTGTCCGATTGTGAACTTAATAGCAATAAAACTTCATCTTTCGGGTATGCCAATTTCACATCTCTCACATTTCTTGATCTTTCTGAGAACAATTTCAATCAAGAAATACCAAATTGGTTGTTTAATCTCAGTAGTCTTGTGTCTCTAAGTCTATTAGACAATCAATTCAAGGGGCAAATTTCAGAGTCTTTAGGACAACTCAAATATCTAGAATATCTCGATGTTTCTTTCAATTCCTTTCATGGCCCTATTCCTACATCCATAGGAAACTTATCATCCTTGAGGTCTTTGGGTCTTTCTGAAAATCAGTTGATTAATGGCACTCTTCCAATGAGTCTGTGGTTTCTATCCAATTTGGAGAATTTAAATGTACGAGGGACTTCCTTAACAGGGACCATATCAGAAGTACATTTTACAGCACTCTCAAAATTGAAGGACTTATTGATATCTGGAACATCTTTATCTTTCCATGTGAACTCCAGTTGGACTCCTCCATTCCAACTAGAGTATCTGGAGGCGGATTCCTGTAAAATGGGTCCAAAATTTCCTGCGTGGCTACAGACACAAAAGTCTCTTTTCTGTCTAGACGTCTCCAGGTCTGGAATTGTGGACACAGCTCCAAACTGGTTCTGGAAGTTCGCTTCATACATCGAACAGATCCATCTCTCTAACAACCAGATATCTGGGGACTTATCCCAAGTTGTACTAAATAATACTATCATTGATTTGAGTTCTAACTGCTTCTCAGGTCGGTTGCCACGTCTGTCTCCGAATGTTGTTGTGTTGAATATTGCTAACAATTCATTCTCGGGACAGATTTCCCCTTTCATGTGCCAAAAGATGAATGGAAGAAGTAAATTGGAGGTCGTTGACATATCAATTAATGCTTTATCAGGGGAACTTTCTGATTGTTGGATGCATTGGTCGTCTCTTACTCATGTAAGCCTGGGAAGCAACAATCTATCTGGTAAAATTCCTAATTCCATGGGTTCTTTGGTCGGACTTAAAGCATTGAGCTTGCAAAACAATTCATTCTATGGAGAAATACCCTCATCACTAGAGAATTGCAAGGTTTTGGGGCTGATAAATCTAAGTGACAATAAATTTTCGGGGATTATACCCAGGTGGATTTTTGAGAGGACAACTCTAATGGTTATCCATTTAAGATCCAATAAATTCAACGGGCATTATTCCTCCACAAATATGCCAACTTTCTTCTCTTATAGTGTTGGATCTTGCTGA 1884 40.39 MRNSRPIILFPLLCFLSSTISILCDPNTLVCNEKEKHALLRFKKALSNPGNRLSSWSVNQDCCRWEAVRCNNVTGRVVELHLGNPYDADDYEFYRLGGEISPALLELEFLSYLNLSWNDFGGSPIPSFLGSMGSLRYLDLTSVGFGGLVPHQLGNLSTLRHLDLGYNNGLYVENLGWISHLAFLKYLGMNGVDLHREVHWLESVSMFPSLSELHLSDCELNSNKTSSFGYANFTSLTFLDLSENNFNQEIPNWLFNLSSLVSLSLLDNQFKGQISESLGQLKYLEYLDVSFNSFHGPIPTSIGNLSSLRSLGLSENQLINGTLPMSLWFLSNLENLNVRGTSLTGTISEVHFTALSKLKDLLISGTSLSFHVNSSWTPPFQLEYLEADSCKMGPKFPAWLQTQKSLFCLDVSRSGIVDTAPNWFWKFASYIEQIHLSNNQISGDLSQVVLNNTIIDLSSNCFSGRLPRLSPNVVVLNIANNSFSGQISPFMCQKMNGRSKLEVVDISINALSGELSDCWMHWSSLTHVSLGSNNLSGKIPNSMGSLVGLKALSLQNNSFYGEIPSSLENCKVLGLINLSDNKFSGIIPRWIFERTTLMVIHLRSNKFNGHYSSTNMPTFFSYSVGSC* 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 17053734 17055618 - Vvi16g679 Vvi16g679 778328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g679 627 Pfam Leucine Rich Repeat 110 129 IPR001611 GO:0005515
Vvi16g679 627 Gene3D Ribonuclease Inhibitor 211 350 IPR032675 -
Vvi16g679 627 Gene3D Ribonuclease Inhibitor 351 620 IPR032675 -
Vvi16g679 627 Gene3D Ribonuclease Inhibitor 31 203 IPR032675 -
Vvi16g679 627 SUPERFAMILY RNI-like 113 460 - -
Vvi16g679 627 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Vvi16g679 627 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 19 290 - -
Vvi16g679 627 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 287 610 - -
Vvi16g679 627 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 236 318 - -
Vvi16g679 627 SUPERFAMILY L domain-like 395 612 - -
Vvi16g679 627 PANTHER LRR RECEPTOR-LIKE KINASE 236 318 - -
Vvi16g679 627 PANTHER LRR RECEPTOR-LIKE KINASE 287 610 - -
Vvi16g679 627 PANTHER LRR RECEPTOR-LIKE KINASE 19 290 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g679 - - - vvi:104882200 1244.57
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001559 0 2 0 0 0 1 1 1 1 0 1 1 1 0 2 1 1 0 1 1 0 5 1 12 10 3 2 4 2 6 60