Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g686 ATGCGTGAAATCTTGCACGTTCAGGGTGGGCAATGTGGGAACCAGATCGGAGCCAAGTTCTGGGAGGTGGTCTGCGCTGAGCACGGCATCGACTCCACCGGGCGCTACCAAGGCGACACGGAGCTGCAACTGGAGCGAGTCAATGTGTACTACAACGAGGCGTGTTGTGGGAGGTTCGTGCCCAGGGCAGTGCTCATGGATCTGGACTCTAAATCACATACTTGGTTGGAATCCTCTCAGGATTGTGAATTAAGAAGTAGCTTGGAAGTGAATCGGTGA 279 54.12 MREILHVQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGDTELQLERVNVYYNEACCGRFVPRAVLMDLDSKSHTWLESSQDCELRSSLEVNR* 93
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 17168324 17169388 + Vvi16g686 Vvi16g686 778335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g686 92 Gene3D Tubulin/FtsZ, GTPase domain 1 87 IPR036525 -
Vvi16g686 92 Pfam Tubulin/FtsZ family, GTPase domain 3 72 IPR003008 GO:0005525
Vvi16g686 92 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Vvi16g686 92 PANTHER TUBULIN BETA CHAIN 1 77 - -
Vvi16g686 92 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Vvi16g686 92 PRINTS Tubulin signature 51 70 IPR000217 GO:0005874|GO:0007017
Vvi16g686 92 PANTHER TUBULIN 1 77 IPR000217 GO:0005874|GO:0007017
Vvi16g686 92 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 73 IPR036525 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g686 K07375 TUBB; tubulin beta - vvi:100261736 144.821
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g686 Blo06g01126 Blo15g00166 . . . . Bma10g01224 Bma14g02083 . . . . . . . . . . . . . . . . Cla01g00267 Cam01g0274 Cec01g0267 Cco01g0282 Clacu01g0274 Cmu01g0262 Cre09g2246 . . . . . . . . . Blo09g00113 . . . Bpe12g00435 Bma08g00325 . . . . . . . . . . Bhi12g00853 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012642 0 0 2 0 0 0 9 0 0 0 0 0 0 0 0 0 1 0 9 0 0 0 1 0 3 1 0 0 0 3 29