Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g688 ATGCGTGAAATCTTGCACGTTCAGGGTGGGCAATGTGGGAACCAGATCGGAGCCAAGTTCGTGCCCAGGGCAATTTTCCGACCCGATAATTTCGGGGCGGAGTTGATTGACTCGGTTCTAGATGTGGTGAGGAAGGAGGCTGAGAATTGTGATTGCTTGCAAGGATTTCAGGTCTGCCACTCTTTGGGAGGTGGAACTGGGTCAGGCATGGGAACACTCCTCATTTCCAAGATCAGAGAAGAATACCCGGATCGAATGATGCTCACATTCTCTGTATTCCCCTCTCCTAAGGTCTCTGACACTGTTGTTGAGCCTTACAACGCCACACTCTCTGTTCACCAGCTTGTTGAGAATGCAGACGAGTGTATGGTTCTTGACAATGAAGCCCTTTATGACATTTGCTTCCGAACACTGAAACTCACTACTCCAAGCTTTGGGGACCTGAATCACCTGATTTCCGCCACCATGAGTGGGGTAACTTGCTGCCTTCGCTTCCCCGGTCAACTCAACTCCGATCTCCGGAAGCTTGCCGTTAACCTCATCCCATTCCCTCGCCTGCACTTCTTCATGATGTGGGATGCAAAGAACATGATGTGTGCTGCTGATCCTCGCCATGGGAGGTACTTGACTGCTTCAGCAATGTTCCGGGGCAAGATGAGCACCAAGGAAGTTGATGAGCAGATGATTAATGTACAAAACAAGAACTCATCCTACTTTGTTGAGTGGATTCCCAATAATGTGAAGTCCACGGTTTGTGACATCCCTCCAACTGGTCTGAAAATGGCGTCGACCTTCATTGGAAACTCAACTTCAATCCAGGAGATGTTCCGGAGGGGGATGGATGAGATGGAATTTACAGAAGCAGAGAGCAACATGAATGATCTGGTCTCGGAATACCAGCAATACCAAGATGCAACAGCGGATGAAGACGGGTATGAGTATGAAGATGAGGAGGAGGAGGAGGAGCTTCAGGAGGCTTAA 981 49.13 MREILHVQGGQCGNQIGAKFVPRAIFRPDNFGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRGMDEMEFTEAESNMNDLVSEYQQYQDATADEDGYEYEDEEEEEELQEA* 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 17206673 17208766 + Vvi16g688 Vvi16g688 778337

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g688 326 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 63 69 IPR017975 GO:0005525|GO:0005874|GO:0007017
Vvi16g688 326 MobiDBLite consensus disorder prediction 308 326 - -
Vvi16g688 326 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Vvi16g688 326 SUPERFAMILY Tubulin C-terminal domain-like 167 306 IPR008280 -
Vvi16g688 326 MobiDBLite consensus disorder prediction 301 326 - -
Vvi16g688 326 PRINTS Tubulin signature 29 53 IPR000217 GO:0005874|GO:0007017
Vvi16g688 326 PRINTS Tubulin signature 55 73 IPR000217 GO:0005874|GO:0007017
Vvi16g688 326 PRINTS Tubulin signature 74 95 IPR000217 GO:0005874|GO:0007017
Vvi16g688 326 PRINTS Tubulin signature 99 112 IPR000217 GO:0005874|GO:0007017
Vvi16g688 326 PRINTS Tubulin signature 113 133 IPR000217 GO:0005874|GO:0007017
Vvi16g688 326 PRINTS Tubulin signature 268 296 IPR000217 GO:0005874|GO:0007017
Vvi16g688 326 PRINTS Beta-tubulin signature 31 49 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi16g688 326 PRINTS Beta-tubulin signature 75 87 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi16g688 326 PRINTS Beta-tubulin signature 135 147 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi16g688 326 PRINTS Beta-tubulin signature 153 162 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi16g688 326 PRINTS Beta-tubulin signature 168 181 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi16g688 326 Pfam Tubulin C-terminal domain 191 278 IPR018316 -
Vvi16g688 326 Gene3D Helix hairpin bin 272 323 IPR023123 -
Vvi16g688 326 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 166 IPR036525 -
Vvi16g688 326 Gene3D - 188 271 IPR037103 -
Vvi16g688 326 PANTHER TUBULIN 191 318 IPR000217 GO:0005874|GO:0007017
Vvi16g688 326 PANTHER TUBULIN 1 21 IPR000217 GO:0005874|GO:0007017
Vvi16g688 326 PANTHER TUBULIN 32 191 IPR000217 GO:0005874|GO:0007017
Vvi16g688 326 Coils Coil 285 305 - -
Vvi16g688 326 CDD beta_tubulin 2 303 - -
Vvi16g688 326 Pfam Tubulin/FtsZ family, GTPase domain 30 134 IPR003008 GO:0005525
Vvi16g688 326 PANTHER TUBULIN BETA CHAIN 32 191 - -
Vvi16g688 326 PANTHER TUBULIN BETA CHAIN 191 318 - -
Vvi16g688 326 PANTHER TUBULIN BETA CHAIN 1 21 - -
Vvi16g688 326 Gene3D Tubulin/FtsZ, GTPase domain 28 187 IPR036525 -
Vvi16g688 326 SMART Tubulin_C_4 169 281 IPR018316 -
Vvi16g688 326 SMART Tubulin_4 3 167 IPR003008 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g688 K07375 TUBB; tubulin beta - aof:109824970 560.451
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g339 Vvi16g688 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g688 . . Bda05g00078 . Bpe03g00285 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00284 . . Blo07g00408 Blo09g00113 . Bda15g00727 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000127 7 8 7 13 9 7 3 7 7 7 7 7 11 7 7 12 6 15 3 7 7 7 6 8 1 6 8 9 9 2 220