Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g698 ATGCACGAGGTTGACCTTCATAGGGAAGTTCAATGGGTTGAATCTATATCAATGTTATCTTCCCTTTCCAAGTTGTTCTTGGAGGATTGTGAACTTGATAACATGAGTCCATCTCTTGAGTATGTCAATTTTACATCTCTCACAGTCCTTTCTCTTTATGGGAATCATTTCAATCATGAGTTGCCCAATTGGCTATCTAATCTCACCGCTAGTCTTTTACAACTCGATCTAAGTCGCAATTGTCTAAAGGGTCATATACCCAACACCATTATAGAGTTACGTCACTTAAATATTTTATATTTGTCAAGAAATCAACTAACAAGGCAAATACCAGAGTATTTAGGGCAACTCAAACATCTAGAAGCTCTTTCACTTAGATATAATTCCTTTGATGGTCCTATTCCTTCATCTCTAGGAAACTCATCATCCTTGAGGTATTTATTTCTGTATGGAAATAGGTTAAATGGAGCTTTTCCAAGCAGTCTGTGGCTTCTTTCAAATTTGGAGACTTTAGATATAGGAAATAACTCCTTAGCCGACACAGTATCAGAAGTGCATTTTAACGAACTCTCAAAATTGAAGTTCTTAGACATGTCCTCAACATCTCTTAATTTCAAAGTCAACTCCAATTGGGTCCCCCCTTTTCAACTTGAAGAATTGTGGTTGAGTTCTTGCCAGATGGGCCCCAAGTTTCCTACATGGCTACAAACTCAAACATCTCTTCGGAATCTGGACATTTCCAAGTCAGGAATTGTGGACATAGCTCCAACATGGTTCTGGAAGTGGGCTTCACATATTGAATGGATCTATCTCTCTGATAACCAGATATCCGGGGATTTATCTGGAGTTTGGCTTAACAATACTAGCATCTATTTGAACTCTAATTGCTTCACCGGTCTGTTACCCGCAGTGTCTCCAAATGTTACTGTATTGAACATGGCCAACAATTCGTTTTCGGGACCAATTTCCCATTTCTTGTGCCAAAAGTTGAAGGGAAAAAGTAAATTGGAGGCGCTGGACTTGTCAAATAATGATTTATCTGGAGAGCTTCCTCTGTGTTGGAAGTCTTGGCAGTCTCTGACTAATGTAAACTTGGGAAACAACAACTTTTCGGGTAAAATTCCAGACTCTGTAGGCTCTTTATTTTCACTCAAAGCATTGCACCTGCAGAATAATGGCTTATCTGGGAGTATACCCTCGTCCTTGCGAGACTGCACATCTTTGGGGCTCCTGGATTTAAGTGGTAATAAACTTTTGGGAAATATACCAAATTGGATAGGAGAATTGACAGCTTTAAAAGCTCTATGTTTAAGATCCAACAAATTCATTGGCGAAATTCCTTCACAGATCTGCCAACTTTCTTCTCTTACAATATTGGATGTTTCAGATAATGAGTTGTCCGGAATTATACCCAGGTGTTTGAATAATTTCAGTTTAATGGCCACAATAGATACTCCAGATGACCTGTTTACTGATTTAGAATATTCCAGTTATGAATTGGAGGGTCTTGTATTGGTGACGGTTGGAAGAGAACTTGAGTACAAAGGGATTCTTAGATATGTTAGAATGGTAGACCTGTCAAGTAATAATTTTTCTGGATCAATCCCTACTGAATTATCACAACTTGCTGGACTACGGTTCTTAAACTTGTCTCGAAATCATTTGATGGGAAGGATACCAGAGAAAATTGGAAGAATGACATCTTTACTATCTCTTGATCTCTCCACAAACCATCTTTCAAGTGAAATTCCTCAAAGTTTGGCCGATTTAACATTTCTTAATCGCTTGAACCTATCATGCAATCAATTTCGGGGAAGAATTCCTTTAAGCACACAGCTTCAGAGCTTTGATGCATTCAGCTACATTGGCAATGCCCAACTTTGCGGAGTCCCTCTTACAAAAAACTGCACAGAAGATGATGAATCTCAAGGTATGGACACCATTGATGAAAATGAAGAAGGTTCTGAAATGCGATGGTTGTACATTAGCATGGGACTTGGGTTCATTGTGGGCTTTTGGGGAGTCTGTGGTGCTCTTTTATTCAAGAAAAGTTGGAGGCATGCTTATTTCCAGTTTCTTTATGACATTAGAGACTGGGTATACGTGGCCGTAGCGATAAGGTTGAATTGGTTCCACGACAATTTGAGGAGGCTGTTGGTAAGTTAA 2166 39.1 MHEVDLHREVQWVESISMLSSLSKLFLEDCELDNMSPSLEYVNFTSLTVLSLYGNHFNHELPNWLSNLTASLLQLDLSRNCLKGHIPNTIIELRHLNILYLSRNQLTRQIPEYLGQLKHLEALSLRYNSFDGPIPSSLGNSSSLRYLFLYGNRLNGAFPSSLWLLSNLETLDIGNNSLADTVSEVHFNELSKLKFLDMSSTSLNFKVNSNWVPPFQLEELWLSSCQMGPKFPTWLQTQTSLRNLDISKSGIVDIAPTWFWKWASHIEWIYLSDNQISGDLSGVWLNNTSIYLNSNCFTGLLPAVSPNVTVLNMANNSFSGPISHFLCQKLKGKSKLEALDLSNNDLSGELPLCWKSWQSLTNVNLGNNNFSGKIPDSVGSLFSLKALHLQNNGLSGSIPSSLRDCTSLGLLDLSGNKLLGNIPNWIGELTALKALCLRSNKFIGEIPSQICQLSSLTILDVSDNELSGIIPRCLNNFSLMATIDTPDDLFTDLEYSSYELEGLVLVTVGRELEYKGILRYVRMVDLSSNNFSGSIPTELSQLAGLRFLNLSRNHLMGRIPEKIGRMTSLLSLDLSTNHLSSEIPQSLADLTFLNRLNLSCNQFRGRIPLSTQLQSFDAFSYIGNAQLCGVPLTKNCTEDDESQGMDTIDENEEGSEMRWLYISMGLGFIVGFWGVCGALLFKKSWRHAYFQFLYDIRDWVYVAVAIRLNWFHDNLRRLLVS* 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 17423019 17425185 - Vvi16g698 Vvi16g698 778347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g698 721 PANTHER RECEPTOR-LIKE PROTEIN 2 ISOFORM X1 2 709 - -
Vvi16g698 721 PRINTS Leucine-rich repeat signature 336 349 - -
Vvi16g698 721 PRINTS Leucine-rich repeat signature 453 466 - -
Vvi16g698 721 Gene3D Ribonuclease Inhibitor 70 184 IPR032675 -
Vvi16g698 721 Gene3D Ribonuclease Inhibitor 10 69 IPR032675 -
Vvi16g698 721 SUPERFAMILY L domain-like 291 633 - -
Vvi16g698 721 SMART LRR_typ_2 93 117 IPR003591 -
Vvi16g698 721 SMART LRR_typ_2 566 590 IPR003591 -
Vvi16g698 721 SMART LRR_typ_2 542 565 IPR003591 -
Vvi16g698 721 SMART LRR_typ_2 19 42 IPR003591 -
Vvi16g698 721 SMART LRR_typ_2 381 405 IPR003591 -
Vvi16g698 721 SMART LRR_typ_2 165 189 IPR003591 -
Vvi16g698 721 SMART LRR_typ_2 453 476 IPR003591 -
Vvi16g698 721 SMART LRR_typ_2 44 68 IPR003591 -
Vvi16g698 721 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED 2 709 - -
Vvi16g698 721 Gene3D Ribonuclease Inhibitor 185 639 IPR032675 -
Vvi16g698 721 SUPERFAMILY L domain-like 16 299 - -
Vvi16g698 721 Pfam Leucine Rich Repeat 455 477 IPR001611 GO:0005515
Vvi16g698 721 Pfam Leucine Rich Repeat 335 355 IPR001611 GO:0005515
Vvi16g698 721 Pfam Leucine rich repeat 94 154 IPR001611 GO:0005515
Vvi16g698 721 Pfam Leucine rich repeat 359 418 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g698 - - - vvi:100265180 1452.57
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00504 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018033 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 6