Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g7 ATGCCACCTCGTAGATATGCGTTTGGGAGGGCAGAGGAGGCCACCCACCCTGACTCCATGAGAGCCACCTTGTCTGAACTCGTCGCCACTTTCATTTTCGTCTTTGCAGGGGAAGGCTCCGTTCTTGCTCTAGGTAAGTTATATGCAGGTGCGACGGCTTTAACAGTTCCGGCTCTGGTGATGGTGGCACTTGCACATGGGTTGGCGCTGTTTGCTGCGGTGTCGGCAAGCATCAACGTATCAGGGGGGCATGTGAACCCAGCTGTTACCTTCGGTGCCCTTGTGGGTGGCAGAATCTCTCTCCTCCGTGCTTTGTACTACTGGGTTGCTCAGCTCTTGGGTGCTGTTCTCGCTGCTCTCCTCTTGAGGTTCGCCACTGGTGGCCTGAGGCCAGTGGGATTCACAGTAGCCTCAGGATACGACGAGTGGCATGCAATGCTTCTCGAGATAGCAATGACATTTGGGCTGGTGTACACAGTGTATGCGACTGCAATTGATCCAAAGAGGGGGAGTCTGGGAGTGATAGCGCCACTGGCCATAGGGTTCATAGTTGGGGCAAACATACTTGTGGGAGGAGCCTTTGATGGAGCATCGATGAACCCAGCAAGGGCATTTGGGCCTGCTCTTGTGGGTTGGAGGTGGAGGTACCAGTGGGTGTACTGGGTGGGGCCTCTTGTTGGTGGTGCTCTTGCTGCTCTCATATATGAATTTCTCGTAATACCCACCGAGCCCCAACATATTCACACACACCACCAGCCTTTGGCTCCTGAGGACTACTAG 780 54.62 MPPRRYAFGRAEEATHPDSMRATLSELVATFIFVFAGEGSVLALGKLYAGATALTVPALVMVALAHGLALFAAVSASINVSGGHVNPAVTFGALVGGRISLLRALYYWVAQLLGAVLAALLLRFATGGLRPVGFTVASGYDEWHAMLLEIAMTFGLVYTVYATAIDPKRGSLGVIAPLAIGFIVGANILVGGAFDGASMNPARAFGPALVGWRWRYQWVYWVGPLVGGALAALIYEFLVIPTEPQHIHTHHQPLAPEDY* 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 102221 103573 - Vvi16g7 Vvi16g7 777656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g7 259 Pfam Major intrinsic protein 14 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g7 259 CDD MIP 21 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g7 259 PANTHER - 3 259 - -
Vvi16g7 259 SUPERFAMILY Aquaporin-like 13 249 IPR023271 -
Vvi16g7 259 PANTHER AQUAPORIN-8 3 259 IPR034294 -
Vvi16g7 259 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g7 259 PRINTS Major intrinsic protein family signature 66 90 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g7 259 PRINTS Major intrinsic protein family signature 103 122 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g7 259 PRINTS Major intrinsic protein family signature 148 166 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g7 259 PRINTS Major intrinsic protein family signature 181 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g7 259 PRINTS Major intrinsic protein family signature 218 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g7 259 TIGRFAM MIP: MIP family channel proteins 26 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi16g7 259 ProSitePatterns MIP family signature. 84 92 IPR022357 -
Vvi16g7 259 Gene3D Glycerol uptake facilitator protein. 5 249 IPR023271 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g7 K09873 - vvi:100252897 515.383