Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi16g7 | ATGCCACCTCGTAGATATGCGTTTGGGAGGGCAGAGGAGGCCACCCACCCTGACTCCATGAGAGCCACCTTGTCTGAACTCGTCGCCACTTTCATTTTCGTCTTTGCAGGGGAAGGCTCCGTTCTTGCTCTAGGTAAGTTATATGCAGGTGCGACGGCTTTAACAGTTCCGGCTCTGGTGATGGTGGCACTTGCACATGGGTTGGCGCTGTTTGCTGCGGTGTCGGCAAGCATCAACGTATCAGGGGGGCATGTGAACCCAGCTGTTACCTTCGGTGCCCTTGTGGGTGGCAGAATCTCTCTCCTCCGTGCTTTGTACTACTGGGTTGCTCAGCTCTTGGGTGCTGTTCTCGCTGCTCTCCTCTTGAGGTTCGCCACTGGTGGCCTGAGGCCAGTGGGATTCACAGTAGCCTCAGGATACGACGAGTGGCATGCAATGCTTCTCGAGATAGCAATGACATTTGGGCTGGTGTACACAGTGTATGCGACTGCAATTGATCCAAAGAGGGGGAGTCTGGGAGTGATAGCGCCACTGGCCATAGGGTTCATAGTTGGGGCAAACATACTTGTGGGAGGAGCCTTTGATGGAGCATCGATGAACCCAGCAAGGGCATTTGGGCCTGCTCTTGTGGGTTGGAGGTGGAGGTACCAGTGGGTGTACTGGGTGGGGCCTCTTGTTGGTGGTGCTCTTGCTGCTCTCATATATGAATTTCTCGTAATACCCACCGAGCCCCAACATATTCACACACACCACCAGCCTTTGGCTCCTGAGGACTACTAG | 780 | 54.62 | MPPRRYAFGRAEEATHPDSMRATLSELVATFIFVFAGEGSVLALGKLYAGATALTVPALVMVALAHGLALFAAVSASINVSGGHVNPAVTFGALVGGRISLLRALYYWVAQLLGAVLAALLLRFATGGLRPVGFTVASGYDEWHAMLLEIAMTFGLVYTVYATAIDPKRGSLGVIAPLAIGFIVGANILVGGAFDGASMNPARAFGPALVGWRWRYQWVYWVGPLVGGALAALIYEFLVIPTEPQHIHTHHQPLAPEDY* | 260 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 102221 | 103573 | - | Vvi16g7 | Vvi16g7 | 777656 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi16g7 | 259 | Pfam | Major intrinsic protein | 14 | 235 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vvi16g7 | 259 | CDD | MIP | 21 | 238 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vvi16g7 | 259 | PANTHER | - | 3 | 259 | - | - | |
Vvi16g7 | 259 | SUPERFAMILY | Aquaporin-like | 13 | 249 | IPR023271 | - | |
Vvi16g7 | 259 | PANTHER | AQUAPORIN-8 | 3 | 259 | IPR034294 | - | |
Vvi16g7 | 259 | PRINTS | Major intrinsic protein family signature | 21 | 40 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vvi16g7 | 259 | PRINTS | Major intrinsic protein family signature | 66 | 90 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vvi16g7 | 259 | PRINTS | Major intrinsic protein family signature | 103 | 122 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vvi16g7 | 259 | PRINTS | Major intrinsic protein family signature | 148 | 166 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vvi16g7 | 259 | PRINTS | Major intrinsic protein family signature | 181 | 203 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vvi16g7 | 259 | PRINTS | Major intrinsic protein family signature | 218 | 238 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vvi16g7 | 259 | TIGRFAM | MIP: MIP family channel proteins | 26 | 235 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vvi16g7 | 259 | ProSitePatterns | MIP family signature. | 84 | 92 | IPR022357 | - | |
Vvi16g7 | 259 | Gene3D | Glycerol uptake facilitator protein. | 5 | 249 | IPR023271 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi16g7 | K09873 | - | vvi:100252897 | 515.383 |