Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g701 ATGTCCTCAAGTTCTCAAACGGTGTATGTTATCATTAATCAGTCGGAGCAGAGTAGCAGGAGCCAAACCCACGGGTTTTCTGATTTGTTTTTGGGAAGAAGCCCTCTCAGGTGCGAGCCTCCCCTTGATCTTGCTAGGAATCATTTCAATCATGAGATACCCAATTGGCTATTTAATCTCAGTACTAGTCTTCTGGATCTTGATTTGAGTTACAATTCTCTAAAGGGTCATATACCTAACACCATTCTAGAGTTACCTTACTTAAATGATTTAGATTTGTCATACAATCAGCTGACAGGGCAAATACCAGAGTATTTAGGGCAACTTAAACATTTAGAAGTCCTTTCACTTGGAGATAATTCCTTTGATGGTCCAATTCCTTCATCTCTAGGAAACTTATCGTCCTTGATCTCCTTATATCTTTGTGGAAATAGGTTAAATGGAACTCTTCCAAGCAATTTGGGGCTTCTTTCAAATTTGCTGATTTTAAATATTGGAAATAACTCCTTAGCCGACACAATATCAGAATCTTGGCAGTCTCTGACTCATGTAAACTTGGGAAACAACAATTTTTCGGGTAAAATTCCTGACTCCATAAGCTCTTTATTTTCACTTAAAGCATTGCACCTGCAGAATAATAGCTTCTCTGGAAGTATACCCTCATCATTGCGAGACTGCACATCTTTGGGGCTACTGGATTTAAGTGGTAATAAACTTTTGGGAAATATACCAAATTGGATAGGAGAATTGACAGCTTTAAAAGCTCTCTGTTTAAGATCCAACAAATTCACTGGCGAAATTCCTTCACAGATCTGTCAACTTTCTTCTCTTACAGTATTGGATGTTTCAGATAATGAGTTGTCCGGAATTATACCCAGGTGTTTGAATAATTTCAGTTTAATGGCCTCAATAGAGACTCCAGATGACCTGTTTACTGATTTAGAATACTCCAGTTATGAATTAGAGGGTCTCGTGTTGATGACAGTTGGGAGAGAACTTGAGTACAAAGGGATTCTTAGATATGTTAGAATGGTAGACCTGTCAAGTAATAATTTTTCTGGATCAATCCCTACTGAATTATCACAACTTGCTGGACTGCGGTTCTTAAACTTGTCTCGAAATCATTTGATGGGAAGGATACCTGAGAAAATTGGAAGAATGACATCTTTACTATCTCTTGATCTCTCCACAAACCATCTTTCAGGTGAAATTCCTCAAAGCTTGGCCGATTTAACATTTCTTAATCTCTTGAACCTATCATACAATCAGTTGTGGGGAAGAATTCCTTTAAGCACACAGCTTCAGAGCTTTGATGCATTCAGCTACATTGGCAATGCCCAACTTTGCGGAGCCCCTCTTACAAAAAACTGCACAGAAGATGAAGAATCTCAAGGTATGGACACCATTGATGAAAATGACGAAGGTTCCGAAATGCGATGGTTCTACATTAGTATGGGACTTGGATTCATTGTAGGCTGTGGGGGAGTCTGTGGTGCTCTTTTGTTCAAGAAAAATTGGAGGTATGCTTATTTCCAGTTTCTTTATGACATTAGAGACTGGGTATATGTGGCCGCAGCGATAAGGTTGAATCGGTTGCACGACAATTTGAGGAGACTATTATTTATTATTTTTATTCTCTTAAAAATAGAAATATGTTTTAAATTATTTTTATTTCTAATGTTAAACCATGACATTAAAATATTTTTGAGAATTTTTATTTTTATTTTTTTATGA 1734 37.14 MSSSSQTVYVIINQSEQSSRSQTHGFSDLFLGRSPLRCEPPLDLARNHFNHEIPNWLFNLSTSLLDLDLSYNSLKGHIPNTILELPYLNDLDLSYNQLTGQIPEYLGQLKHLEVLSLGDNSFDGPIPSSLGNLSSLISLYLCGNRLNGTLPSNLGLLSNLLILNIGNNSLADTISESWQSLTHVNLGNNNFSGKIPDSISSLFSLKALHLQNNSFSGSIPSSLRDCTSLGLLDLSGNKLLGNIPNWIGELTALKALCLRSNKFTGEIPSQICQLSSLTVLDVSDNELSGIIPRCLNNFSLMASIETPDDLFTDLEYSSYELEGLVLMTVGRELEYKGILRYVRMVDLSSNNFSGSIPTELSQLAGLRFLNLSRNHLMGRIPEKIGRMTSLLSLDLSTNHLSGEIPQSLADLTFLNLLNLSYNQLWGRIPLSTQLQSFDAFSYIGNAQLCGAPLTKNCTEDEESQGMDTIDENDEGSEMRWFYISMGLGFIVGCGGVCGALLFKKNWRYAYFQFLYDIRDWVYVAAAIRLNRLHDNLRRLLFIIFILLKIEICFKLFLFLMLNHDIKIFLRIFIFIFL* 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 17450060 17472817 - Vvi16g701 Vvi16g701 778350

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g701 577 SUPERFAMILY L domain-like 179 453 - -
Vvi16g701 577 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED 176 514 - -
Vvi16g701 577 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED 42 120 - -
Vvi16g701 577 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED 102 177 - -
Vvi16g701 577 SUPERFAMILY L domain-like 42 183 - -
Vvi16g701 577 SMART LRR_typ_2 387 415 IPR003591 -
Vvi16g701 577 SMART LRR_typ_2 133 157 IPR003591 -
Vvi16g701 577 SMART LRR_typ_2 85 109 IPR003591 -
Vvi16g701 577 SMART LRR_typ_2 363 386 IPR003591 -
Vvi16g701 577 SMART LRR_typ_2 274 297 IPR003591 -
Vvi16g701 577 SMART LRR_typ_2 202 226 IPR003591 -
Vvi16g701 577 Pfam Leucine rich repeat 180 239 IPR001611 GO:0005515
Vvi16g701 577 Pfam Leucine rich repeat 86 146 IPR001611 GO:0005515
Vvi16g701 577 Gene3D Ribonuclease Inhibitor 24 179 IPR032675 -
Vvi16g701 577 Pfam Leucine Rich Repeat 276 298 IPR001611 GO:0005515
Vvi16g701 577 Gene3D Ribonuclease Inhibitor 180 466 IPR032675 -
Vvi16g701 577 PRINTS Leucine-rich repeat signature 88 101 - -
Vvi16g701 577 PRINTS Leucine-rich repeat signature 274 287 - -
Vvi16g701 577 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 102 177 - -
Vvi16g701 577 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 42 120 - -
Vvi16g701 577 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 176 514 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g701 - - - vvi:100244601 693.73
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g701 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018033 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 6